RNA id: TU33651


Basic Information

Item Value
RNA id TU33651
length 505
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G29409
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28862257 ~ 28862761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGACTCTACAAGACGCTGACAAATCTTGGTATTGCAGAGTACTTTTGATATAGGGGTGTAAAGCCTCTCTTTGGTAATCATCATACATGCTTTACCCCCTCTACTAATCGCTCTATTGAAAATGCATCATTGTCTGTAGAAGGGTACAAATCACATCTATAAGGCTAACCTTGTAATAAAGCTAATGGCAATTTATTGGATGGTGTTGTTGTTCTAATGACGTGTCATCCAAAATGTAAACCATCACTTGGGTAAGAGTGATCATGCAAGGATGGAGTTATAGCTTTGACTAGTAGAGTAGTAAACGTTGCCTGCTAATCAGAATATCTGCATGTGTAAATGTGTGAAGTAGCCactttacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtatacttcaactatgacagacaaaatgagaaaaaatccagaaaatcaaattgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33613 lncRNA downstream 27314 28833670 ~ 28834943 (-) True G29376
TU33614 lncRNA downstream 28492 28833569 ~ 28833765 (-) False G29376
TU33637 lncRNA downstream 30766 28831269 ~ 28831491 (-) True G29395
TU33622 lncRNA downstream 95277 28765648 ~ 28766980 (-) True G29380
TU33623 lncRNA downstream 96714 28764298 ~ 28765543 (-) True G29381
TU33663 lncRNA upstream 10811 28873572 ~ 28874071 (-) True G29421
TU33676 lncRNA upstream 18181 28880942 ~ 28881152 (-) True G29434
TU33851 lncRNA upstream 35115 28897876 ~ 28898094 (-) True G29603
TU33855 lncRNA upstream 42702 28905463 ~ 28906336 (-) True G29607
TU33913 lncRNA upstream 132612 28995373 ~ 28995577 (-) True G29665
XM_036975282.1 mRNA downstream 19607 28835278 ~ 28842650 (-) True LOC110520608
XM_021598040.2 mRNA downstream 20292 28835278 ~ 28841965 (-) False LOC110520608
XM_021598024.2 mRNA downstream 20337 28835278 ~ 28841920 (-) False LOC110520608
XM_021598032.2 mRNA downstream 20337 28835278 ~ 28841920 (-) False LOC110520608
XM_021598015.2 mRNA downstream 20445 28835278 ~ 28841812 (-) False LOC110520608
LOC110532163 mRNA upstream 220 28862981 ~ 28882631 (-) True LOC110532163
XR_005041213.1 mRNA upstream 509172 29371933 ~ 29380725 (-) True LOC118946030
XM_021598179.2 mRNA upstream 800187 29662948 ~ 29670318 (-) False nr2f2
XM_021598185.2 mRNA upstream 802319 29665080 ~ 29670314 (-) False nr2f2
XM_021598193.2 mRNA upstream 802319 29665080 ~ 29672991 (-) True nr2f2
TU33578 other downstream 157901 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 795952 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 799807 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 1219137 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 3580239 25281604 ~ 25282018 (-) True G25117
TU34164 other upstream 417515 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 2269132 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 2563362 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3122010 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 4244358 33107119 ~ 33108497 (-) True G35075

Expression Profile