RNA id: TU33676



Basic Information


Item Value
RNA id TU33676
length 211
lncRNA type intronic
GC content 0.44
exon number 1
gene id G29434
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28880942 ~ 28881152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctaaTATACatagtcagttaggaaagcaaaggctagctttttcgaacagaaatttgcatcccgcagcactaattccaaaacgttttgggacactgtaaagtccatggagaataagagcacctcctcccagctgcccacaggcttggaaacactgtcaccaccgataaatccacgataacatttcacatttcattaagcatttctctacggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU33663 lncRNA downstream 6871 28873572 ~ 28874071 (-) True G29421
TU33651 lncRNA downstream 18181 28862257 ~ 28862761 (-) True G29409
TU33613 lncRNA downstream 45999 28833670 ~ 28834943 (-) True G29376
TU33614 lncRNA downstream 47177 28833569 ~ 28833765 (-) False G29376
TU33637 lncRNA downstream 49451 28831269 ~ 28831491 (-) True G29395
TU33851 lncRNA upstream 16724 28897876 ~ 28898094 (-) True G29603
TU33855 lncRNA upstream 24311 28905463 ~ 28906336 (-) True G29607
TU33913 lncRNA upstream 114221 28995373 ~ 28995577 (-) True G29665
TU33914 lncRNA upstream 114811 28995963 ~ 28996162 (-) True G29666
TU33916 lncRNA upstream 118090 28999242 ~ 28999444 (-) True G29668
XM_036975282.1 mRNA downstream 38292 28835278 ~ 28842650 (-) True LOC110520608
XM_021598040.2 mRNA downstream 38977 28835278 ~ 28841965 (-) False LOC110520608
XM_021598024.2 mRNA downstream 39022 28835278 ~ 28841920 (-) False LOC110520608
XM_021598032.2 mRNA downstream 39022 28835278 ~ 28841920 (-) False LOC110520608
XM_021598015.2 mRNA downstream 39130 28835278 ~ 28841812 (-) False LOC110520608
XR_005041213.1 mRNA upstream 490781 29371933 ~ 29380725 (-) True LOC118946030
XM_021598179.2 mRNA upstream 781796 29662948 ~ 29670318 (-) False nr2f2
XM_021598185.2 mRNA upstream 783928 29665080 ~ 29670314 (-) False nr2f2
XM_021598193.2 mRNA upstream 783928 29665080 ~ 29672991 (-) True nr2f2
XR_005051428.1 mRNA upstream 1397103 30278255 ~ 30284238 (-) True LOC118964375
TU33578 other downstream 176586 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 814637 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 818492 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 1237822 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 3598924 25281604 ~ 25282018 (-) True G25117
TU34164 other upstream 399124 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 2250741 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 2544971 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3103619 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 4225967 33107119 ~ 33108497 (-) True G35075

Expression Profile