RNA id: TCONS_00027318


Basic Information

Item Value
RNA id TCONS_00027318
length 1214
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_013434
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 24047486 ~ 24083836 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCAAGTGCACAATGTACCAATCCATACAACTGACCATCTTAAAGCTGATTACTCATGGATTTTTGATGAGGTCCATCAAGGCAGCTGATGTATTGCTCTTCTTCAGACTACCTGCTCTAGTCTCAACATGTTGCAGTCTGACAGTAGTTGGTCGGAGTCTTTTGGCACATCTCCACAGGGCTATCAGATGAGACACAAATGAACTGAGCCAAGACACAAGAGACAACACCAGAGTCTTGGACTCAGATACACTTCCTCCTCATGTTAACCAGCCAGCAACAGTATCCTTTCCACATGCAGTCAATGTAATTGTGTGGTTTACATTTATGGAACATTGAGGAACGCAtgacaaaaaaatctattatCCGGTTGTTTTCTGTGTCTAAATACATGGAAAATCCTGTCTTAATTGATAGCATTCCATCATAGCTTTTAAAAGTTTCATGGGTAGCGGATGAGAAACAGAATCAGATTCCATTAATAGTGATTGCCAACTTAGCATCAAATCTTTGGAGGTTAGTGGTCAAATAGTTAACAGTTCATTGCTGACCTGGAATGTAAGTGTTTCAGACAGCTTGGAGGACATTCTACTTATTCCAGTCCAGTGAGCTTTAGCTTTGTTGAGGTGATTGAGGCTGTAGTCTTTAGTTCTTTCTTCATCCACTCttcccaaaacacacacacacacacgcacacaaatagTAGAAGGTGAAAAAATAGAAAGGAAACTGTCTTATAGCATACGCCACCTTCTGAACACCATAATCTTTGTTCCTTTGTTTGTCTGAGTAGAGGTAGCCTCTGCTACTAGGGTTTTATATCACTTTCTAATccaaaataaacagcagaaataCTCATGCCAATTAAACATGCATGATTTCCAGTTAAAGCCGCCTGTTGTAATGGAATTTGACAGTCCTCTTAATTGGGCACTCAGATGCAGGCACTCAGATccacttttaaagggatagttcacccaaaaattgctATTTTGGTGCCATTTAAATCATCTTagttccaaactttttttatttatttacttttattttctgttgaacacaatggaagATTAAAAAATACTTAAGATATATATAAGAAAGTACAATGCTATTTCATGGAAATTCCTAACTTTTtgaattagtggctaatttgtaatcATTAAGATCTTATTTGAACTATTTAGTGCAATTTGCTTATACCATTTGAGAAAAGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0043169 cation binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027316 lncRNA downstream 24225 23933175 ~ 24023261 (-) True XLOC_013432
TCONS_00027314 lncRNA downstream 162832 23877479 ~ 23884654 (-) False XLOC_013433
TCONS_00027315 lncRNA downstream 162876 23881809 ~ 23884610 (-) True XLOC_013433
TCONS_00026520 lncRNA downstream 213577 23830265 ~ 23833909 (-) True XLOC_013431
TCONS_00027313 lncRNA downstream 214510 23830265 ~ 23832976 (-) False XLOC_013431
TCONS_00027319 lncRNA upstream 257769 24341605 ~ 24476885 (-) False XLOC_013435
TCONS_00027320 lncRNA upstream 266734 24350570 ~ 24476885 (-) False XLOC_013435
TCONS_00027321 lncRNA upstream 266734 24350570 ~ 24476890 (-) False XLOC_013435
TCONS_00027323 lncRNA upstream 266734 24350570 ~ 24476910 (-) False XLOC_013435
TCONS_00027322 lncRNA upstream 266734 24350570 ~ 24476910 (-) False XLOC_013435
TCONS_00026521 mRNA downstream 172116 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA downstream 172267 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA downstream 172557 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026514 mRNA downstream 1293849 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 1293849 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026532 mRNA upstream 849637 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 854856 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026534 mRNA upstream 897048 24980884 ~ 24988645 (-) True XLOC_013440
TCONS_00026538 mRNA upstream 912183 24996019 ~ 24996634 (-) True XLOC_013441
TCONS_00026539 mRNA upstream 943659 25027495 ~ 25051846 (-) True XLOC_013442
TCONS_00026523 other downstream 24473 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026516 other downstream 1185019 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026513 other downstream 1304120 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026504 other downstream 1495230 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026501 other downstream 1963600 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026525 other upstream 189592 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other upstream 232345 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026527 other upstream 304183 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026529 other upstream 476351 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026536 other upstream 906432 24990268 ~ 24996647 (-) False XLOC_013441

Expression Profile

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