RNA id: TU33947



Basic Information


Item Value
RNA id TU33947
length 268
lncRNA type antisense_over
GC content 0.60
exon number 1
gene id G29699
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 29045592 ~ 29045859 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGCAGGTTTGGTCCTGGAGAAGACGAAGGCTCCAGCACTGCAGCGACGGACCTCCTGGTTACAGGCGTGGATGTCGATGCGGTAGACAGTGAAGGGCTGTAGGTTGGTGATCTCTATAAACTCTGTCTTGCTCCGGTCCTCCATGAAGGGGAACTCCCTCTCGGGGGATTCTCCGTCTGTCCCATTACCCTCCAGGCCTGTGGTGTTGCCACCCCGCGCCAAGGTGCTGTTAGCCACCCCAAATAGATCCCTACGCCGCCGGTCGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU33946 lncRNA downstream 864 29044424 ~ 29044728 (-) True G29698
TU33941 lncRNA downstream 7592 29037628 ~ 29038000 (-) True G29693
TU33938 lncRNA downstream 11902 29033440 ~ 29033690 (-) True G29690
TU33929 lncRNA downstream 19196 29025984 ~ 29026396 (-) True G29681
TU33917 lncRNA downstream 45597 28999733 ~ 28999995 (-) True G29669
TU33948 lncRNA upstream 1262 29047121 ~ 29047353 (-) True G29700
TU33949 lncRNA upstream 2859 29048718 ~ 29049162 (-) True G29701
TU33958 lncRNA upstream 14601 29060460 ~ 29060664 (-) True G29709
TU33960 lncRNA upstream 15723 29061582 ~ 29061782 (-) True G29711
TU33964 lncRNA upstream 19807 29065666 ~ 29067792 (-) True G29715
LOC110532163 mRNA downstream 162961 28862981 ~ 28882631 (-) True LOC110532163
XM_036975282.1 mRNA downstream 202942 28835278 ~ 28842650 (-) True LOC110520608
XM_021598040.2 mRNA downstream 203627 28835278 ~ 28841965 (-) False LOC110520608
XM_021598024.2 mRNA downstream 203672 28835278 ~ 28841920 (-) False LOC110520608
XR_005041213.1 mRNA upstream 326074 29371933 ~ 29380725 (-) True LOC118946030
XM_021598179.2 mRNA upstream 617089 29662948 ~ 29670318 (-) False nr2f2
XM_021598185.2 mRNA upstream 619221 29665080 ~ 29670314 (-) False nr2f2
XM_021598193.2 mRNA upstream 619221 29665080 ~ 29672991 (-) True nr2f2
XR_005051428.1 mRNA upstream 1232396 30278255 ~ 30284238 (-) True LOC118964375
TU33578 other downstream 341236 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 979287 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 983142 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 1402472 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 3763574 25281604 ~ 25282018 (-) True G25117
TU34164 other upstream 234417 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 2086034 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 2380264 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 2938912 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 4061260 33107119 ~ 33108497 (-) True G35075

Expression Profile