RNA id: TCONS_00027320


Basic Information

Item Value
RNA id TCONS_00027320
length 1125
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id XLOC_013435
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 24273428 ~ 24476910 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTATGGATCGTTACGTTTAGATGTATGCAGAAGCTGTTGCGGTGAAATAGTTTCTCACTACTAGAATCTACCAAAATAAAGCTATCAAAAGAGTTAATGAGGATAAGGTGTTTGTTTCGTTATCTGTTTAGATGACCTCACACTTATCTTGGGTCAGCCTCCATCCCACCTTGAGGGTGTTCAACTGAAGAGATTCTCCTGTCCCTGCTGAAGTGTCTTCTCTTTATCACCACCCAATGGGCATTTGGTCTCAGCCATTATGGATCAGAAAGAGCGCACTGCAATCAACAGGAAAGTTCTCGTTTCAGGAGAGTACATTGTCAGATGTCTCATGACCTACAATGGCAAGtgaAGCTGCTGTATGGGTCCACTGAACATCAAATATGGAAGAAACGTCTTTTTGCAACAGCATGGCTCCCTGTATGATGCATCTTGAAGAATGCTCAACAACCGTAAGAACAAAGAGAAACTCTGGCCGTATCGCTGTGTgttcaaacattttaaactcCCAGCAGCACGGTGATAAATCCACTGGACTGTTCAGCAGCAAGAGAACGTTACAGCATTCAAGAGATGCCTTGCCCTGCACTTTAGACGGCCATTTATGATGGAGTCCCCAACCGCAATTACGGGAGCCTTGGGCTGCTACCGGAAACAAACCCACTGACACGTTGACAAAAATCCCTGCCCCGTGTTTATATGGCGTTTTGCAGAGAAATCGGAAAAGGTAATCATGTATGGAGGCCGGGGTTAAGAAGCAATGTAACAGTCTATTAACTTTAATATAGATATGTGGAATAAGCATATGCAGAGGCCCATTAGCATAAATCTTGGTTCCACACGAGCAGGTCTCCACAGCGCGGCACGGGCGCACTTTCTCTCGGTGGAGAGTCTAATGACAAACACTGGATGAAGTGAGACTCTGCACTTGAGCTCTCAATTAGAGGCCCTGCTGTTTAGCAGTGCTCGCTCCCTCTCACTGCCACTTCTGAGACGCAAGGAGCAAATAGAGGACTGAAACACACAGtggtaatgtttttatttgtaaataatggTATGGGTGGCTGGGTGGCTTTATTATTTGAAGTGCAATACTAGCAAGATAAAATGCTGTGAATAGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027318 lncRNA downstream 266734 24047486 ~ 24083836 (-) True XLOC_013434
TCONS_00027317 lncRNA downstream 271326 24047486 ~ 24079244 (-) False XLOC_013434
TCONS_00027316 lncRNA downstream 327309 23933175 ~ 24023261 (-) True XLOC_013432
TCONS_00027314 lncRNA downstream 465916 23877479 ~ 23884654 (-) False XLOC_013433
TCONS_00027331 lncRNA upstream 20739 24497624 ~ 24507208 (-) False XLOC_013437
TCONS_00027332 lncRNA upstream 20739 24497624 ~ 24537349 (-) False XLOC_013437
TCONS_00027334 lncRNA upstream 20739 24497624 ~ 24537463 (-) False XLOC_013437
TCONS_00027333 lncRNA upstream 20739 24497624 ~ 24537463 (-) False XLOC_013437
TCONS_00027335 lncRNA upstream 20739 24497624 ~ 24542318 (-) False XLOC_013437
TCONS_00026521 mRNA downstream 475200 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA downstream 475351 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA downstream 475641 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026514 mRNA downstream 1596933 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 1596933 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026532 mRNA upstream 456588 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 461807 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026534 mRNA upstream 503999 24980884 ~ 24988645 (-) True XLOC_013440
TCONS_00026538 mRNA upstream 519134 24996019 ~ 24996634 (-) True XLOC_013441
TCONS_00026539 mRNA upstream 550610 25027495 ~ 25051846 (-) True XLOC_013442
TCONS_00026526 other downstream 34271 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026523 other downstream 327557 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026516 other downstream 1488103 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026513 other downstream 1607204 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026504 other downstream 1798314 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026529 other upstream 83302 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026536 other upstream 513383 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026541 other upstream 681776 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026548 other upstream 1039008 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026554 other upstream 1277953 25754838 ~ 25758277 (-) False XLOC_013451

Expression Profile

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