RNA id: TU35693


Basic Information

Item Value
RNA id TU35693
length 1302
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G31374
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 30403301 ~ 30404602 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgatccATCAGCTGCTAGGGCATTGTATCACACTACACATCATTCATTTAGGAATTCATCGTAGAGGCTCATTTCTCCTGAGCCTCTAGTTTGTGAAAGTACATACTACTGTGAAACATTTTATAAATCAAACTACTGCCTCTGTAATGTAGCAGAAGTCTACCCCTCAAGTCTAGTCTATTGAAGTAGTTCCAGGCCTTTAATGATTGCAaatcacccccccaaaaaacttgtTTTAAGTAAATACTTATTCTATTTCATCTTCAGGATATTCTTCAAACACAAACTTTTATCTTGGTTTTTAGTATTTTttacacatacacaattcattaAATCACCCAATTTGATctgataattatattaattaaCAGTTTAATCCTGCTATGGCAAGTGTTTTCGTAATCAAAGATCACAATGTAATTATAATTTGTAAGAGCTTCAAAATATTTAGGAACATACAGGACAAATTTCAAGAGCTATAGGAGTACACTCACAGTGTTACCTTGAACAAAAATCATCATATTCTCAAATTAGAGTTCACTGCTAAAAAGCAACTGATTGCAGCTAAAAAAAAATCCACCATTTTGGTAATTCCAACCAATTGTTGACATAGATTGTTGATTTCTCTACTGTGGGTTTTAGACACCATTGTGTCAGACAGCACAGTGAGACCCTTCAATAAAGGAGAGAGGCTCATGAATACCAATGGTATTGGTTCGAGCATCATAGACACCTCAATTACTAACACACTCCTCGACATGTATCACACTCTGGATCACATCAAAGCCTGACAAACGCAATTATAGTTCATCAAACAAAACCTATTTTGAATGTAAAACCCATGCATGATCAGCCTCTGTTCATTCCATCCAGTGCTCTCAAACAAATGAATGCTTCCCCTTGTGAATCAAACACAGCATCACAAAACATGACAGTTTCAAACTGCAAAGTGCAAACAAAAAATAAGGATGAATTACCATTTTTAGCATCACACTTAAATTCAGGCGTTCATATTCAAAGTAATGTTTATATTTTGGCCCAATGGAGGTTGACTGGGTGACATTTAAAGGAAAAAGAGAGTTTGATGTTAATTGGGTTACTGTAGAGGTTGAGATATGTTGAGATATGGCCCACAAACAATTCTGTAAACAGTGATTGACTTTTGTGATGTAAAGAAAAACTCTTCACTCTGTTTTTCGCTACAGTTTGTGGTTTGGGTGAtaaataaaggcaaaaaaaagtaacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35770 lncRNA downstream 58821 30343905 ~ 30344480 (-) True G31451
TU35686 lncRNA downstream 66931 30329922 ~ 30336370 (-) False chd2
TU35687 lncRNA downstream 66931 30329922 ~ 30336370 (-) False chd2
TU35688 lncRNA downstream 66931 30329922 ~ 30336370 (-) True chd2
TU35705 lncRNA downstream 193082 30209986 ~ 30210219 (-) True G31386
TU35795 lncRNA upstream 3492 30408094 ~ 30408300 (-) True G31472
TU35797 lncRNA upstream 6278 30410880 ~ 30411088 (-) True G31474
TU35692 lncRNA upstream 9479 30414081 ~ 30414692 (-) True slco3a1
TU35840 lncRNA upstream 83670 30488272 ~ 30495194 (-) True G31513
TU35873 lncRNA upstream 144966 30549568 ~ 30549776 (-) True G31546
NM_001124240.1 mRNA downstream 2655 30373276 ~ 30400646 (-) True st8sia2
XR_002473027.2 mRNA downstream 50653 30346755 ~ 30352648 (-) False LOC110520865
XR_002473028.2 mRNA downstream 50653 30346755 ~ 30352648 (-) True LOC110520865
XM_021598263.2 mRNA downstream 66886 30303619 ~ 30336415 (-) False chd2
XM_021598254.2 mRNA downstream 66891 30303619 ~ 30336410 (-) False chd2
XM_021598330.2 mRNA upstream 9479 30414081 ~ 30461343 (-) False slco3a1
XM_021598341.2 mRNA upstream 112817 30517419 ~ 30549437 (-) False plin1
XM_021598342.2 mRNA upstream 112817 30517419 ~ 30549437 (-) True plin1
XM_021598368.2 mRNA upstream 309236 30713838 ~ 30774808 (-) False LOC110520931
XM_021598357.2 mRNA upstream 309236 30713838 ~ 30981725 (-) True LOC110520931
TU34164 other downstream 1122601 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 1698945 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 2336996 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 2340851 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 2760181 27636088 ~ 27643120 (-) True LOC110520292
TU37184 other upstream 727291 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 1021521 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 1580169 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 2702517 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 3037766 33442368 ~ 33452413 (-) True G35299

Expression Profile