RNA id: TU37428


Basic Information

Item Value
RNA id TU37428
length 548
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G33021
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 31562716 ~ 31563263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATTTTTTATTTGAACCTTAATCCAATGACagtgacattttttttgttgatttcactttgAATTCACCTTAGTTGACAACTTAACCAAATGTAAAAACTAGAGTGCTTCATTTTGCAGCTGTCCTGGCGACAGTAGGATTGTTCAACAACACAAACTGTATTGCCTGTTGACTTGAGAGGAAAGTAAAACAGGTAAGTGCACATCTCTTTCCATCTTGACAACAAATAAATTAATAATCTCCATCATTAGATAAAGCCATGGTCTCAGGTCAGTGAGGTCACtcaacaacacatacagtatagccAAGACTGAGCTAACATTATCAGCACTGTTAGACTTAGAGGAAATAGTCTAAGACATATGCAGGGTAGGGCTATGCTATGGGCCTTCCAGCCTTACTACTTGTGCCAAGAGGAGCTCATTATTTGGCCAGATAGGATCCAGGGACCAGTCCTGACAGGCCGTTCCTCTCCACAGTCCACCAGCCATCCACACCCTGCTCAATGACCACCACCATCTCCCCTCCAGACATGGACAGCTCACCC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37432 lncRNA downstream 2934 31557866 ~ 31559782 (-) True G33025
TU37404 lncRNA downstream 117767 31426123 ~ 31444949 (-) False LOC110521048
TU37352 lncRNA downstream 218264 31344251 ~ 31344452 (-) True G32952
TU37264 lncRNA downstream 342942 31218104 ~ 31219774 (-) True G32875
TU36641 lncRNA downstream 474721 31087694 ~ 31087995 (-) True G32298
TU37430 lncRNA upstream 15181 31578444 ~ 31600483 (-) True G33023
TU37514 lncRNA upstream 48679 31611942 ~ 31613064 (-) True G33104
TU37520 lncRNA upstream 53858 31617121 ~ 31682005 (-) True G33109
TU37624 lncRNA upstream 213902 31777165 ~ 31782159 (-) True G33212
TU37659 lncRNA upstream 284428 31847691 ~ 31847899 (-) True G33246
XM_021598486.2 mRNA downstream 13428 31461269 ~ 31549288 (-) False LOC110521059
XM_021598492.2 mRNA downstream 13428 31461269 ~ 31549288 (-) False LOC110521059
XM_021598504.2 mRNA downstream 13428 31461269 ~ 31549288 (-) True LOC110521059
XM_021598498.2 mRNA downstream 14946 31461269 ~ 31547770 (-) False LOC110521059
XM_021598509.2 mRNA downstream 14947 31461269 ~ 31547769 (-) False LOC110521059
XM_021598569.2 mRNA upstream 3111 31566374 ~ 31582313 (-) False tspan3a
XM_021598577.2 mRNA upstream 3111 31566374 ~ 31582313 (-) False tspan3a
XM_021598551.2 mRNA upstream 3111 31566374 ~ 31582329 (-) False tspan3a
XM_021598560.2 mRNA upstream 3111 31566374 ~ 31582335 (-) True tspan3a
XM_021598585.2 mRNA upstream 38125 31601388 ~ 31609175 (-) False LOC110521155
TU37405 other downstream 117767 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 429825 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 2282016 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 2858360 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 3496411 28057443 ~ 28066305 (-) True G28870
TU37804 other upstream 421508 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 1543856 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 1879105 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 2304295 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 2714437 34277700 ~ 34362736 (-) True G36141

Expression Profile