RNA id: TU37514


Basic Information

Item Value
RNA id TU37514
length 1061
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G33104
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 31611942 ~ 31613064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaacaagtctaggtgtctgaatactgtccaaatgcactgtagaaaTTGTTTTTGTTGGTCAGTAATTTGATCTTGTTAATGTTAGTGGAATAGCATGTTCTAAGATGTTCTATTATGGCAGTATTATGCCCTAAAACTATGCAATGCACTCTTCCAAATACAGAGCAAACAATATTACTCTTGCCTCTTTACTGGGAATTTGTTTTTGTgcacattttttgcaaatgttttcttGCCTTTTGAAAATTGCCAGGTTTTTGTAGTTCAGTTCATTTTTGTTGAACTTTATAAACCCCATAATCTGTTAATTAGAAATGAATATGTTCACAGCTTAAGTctgaacagtacagtacaccgaTCCCCTTACCCTGGTTCCTCAAACGATTGGCACTTGTCGTGATATGTAACTGACAAAGCTTTGAGTGTTGAAGAGTGGGAAGGGGCTTATAGAAATGAACACTAACTTTGTTAGTGCCATTTACACGCATGAGTCAACTTACAAAGTGAAAGACATGGCTATATAATATGAGAACCATGTAAAAACTGGGTTAGACCTGGCCCATGGTCACAGTAAAGCAGTAGCTCACCTGGTAGCTTATCTTTATGACTGAAATTGATATGCATTCACATCATTCACACTTCTGGTGTTTACTTATTCATGAACTGTAGATGACCGTGTCAAAAATACTGTAAGTAAATTGTGGTCTGTTGTGACATGAGCAAACTGTTAAATGTCTGTAATGTGTGTAATGGGGTGATATTGTCACTAGTTTGTAGTGTATGTACTggagtgaggtgagtgaggtgagtgaggtgagtgaggtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagttatgTGTGTGCTTGTTGGCAGAGTGCTACTGAAATTAATGTCCATGACACTGTAATATTTGGTATGTTATGTGGTGCCAACAGATTTTGTAAAATAAAAGTGTACATACCATTCTTGTTAAACGTTCATACTCATATTTTTACGTACTGTATTTACAGATTTACTCAATGTTATAATTTACAATC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37430 lncRNA downstream 11459 31578444 ~ 31600483 (-) True G33023
TU37428 lncRNA downstream 48679 31562716 ~ 31563263 (-) True G33021
TU37432 lncRNA downstream 52160 31557866 ~ 31559782 (-) True G33025
TU37404 lncRNA downstream 166993 31426123 ~ 31444949 (-) False LOC110521048
TU37352 lncRNA downstream 267490 31344251 ~ 31344452 (-) True G32952
TU37520 lncRNA upstream 4057 31617121 ~ 31682005 (-) True G33109
TU37624 lncRNA upstream 164101 31777165 ~ 31782159 (-) True G33212
TU37659 lncRNA upstream 234627 31847691 ~ 31847899 (-) True G33246
TU37665 lncRNA upstream 238273 31851337 ~ 31851612 (-) True G33252
TU37803 lncRNA upstream 374295 31987359 ~ 31989249 (-) True G33386
XM_021598585.2 mRNA downstream 2767 31601388 ~ 31609175 (-) False LOC110521155
XM_021598593.2 mRNA downstream 2767 31601388 ~ 31609175 (-) False LOC110521155
XM_036975648.1 mRNA downstream 2767 31601388 ~ 31609175 (-) False LOC110521155
XM_036975652.1 mRNA downstream 2767 31601388 ~ 31609175 (-) True LOC110521155
XM_021598560.2 mRNA downstream 29607 31566374 ~ 31582335 (-) True tspan3a
XM_021598634.2 mRNA upstream 1112 31614176 ~ 31637844 (-) False LOC110521169
XM_021598613.2 mRNA upstream 1112 31614176 ~ 31638335 (-) False LOC110521169
XM_021598627.2 mRNA upstream 1112 31614176 ~ 31638335 (-) False LOC110521169
XM_021598606.2 mRNA upstream 1112 31614176 ~ 31638698 (-) False LOC110521169
XM_021598620.2 mRNA upstream 1112 31614176 ~ 31638698 (-) True LOC110521169
TU37405 other downstream 166993 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 479051 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 2331242 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 2907586 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 3545637 28057443 ~ 28066305 (-) True G28870
TU37804 other upstream 371707 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 1494055 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 1829304 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 2254494 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 2664636 34277700 ~ 34362736 (-) True G36141

Expression Profile