RNA id: TU37662



Basic Information


Item Value
RNA id TU37662
length 497
RNA type TUCP
GC content 0.45
exon number 1
gene id G33249
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 31850473 ~ 31850969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaaaatatccataTAAAGTGTCGCttaaagtttgtcacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggtagcatcatggtttgggcctgcttttcttcagcagggacagagaagatggttaaaattgatgggaagatggatggagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37660 lncRNA upstream 1498 31848741 ~ 31848975 (+) True G33247
TU37158 lncRNA upstream 17841 31832209 ~ 31832632 (+) True G32774
TU37131 lncRNA upstream 51442 31798384 ~ 31799031 (+) True G32748
TU37130 lncRNA upstream 52284 31797911 ~ 31798189 (+) True G32747
TU37062 lncRNA upstream 158312 31691899 ~ 31692161 (+) True G32680
TU37664 lncRNA downstream 250 31851219 ~ 31851475 (+) True G33251
TU37671 lncRNA downstream 5403 31856372 ~ 31856678 (+) True G33258
TU37748 lncRNA downstream 117094 31968063 ~ 31968385 (+) True G33334
TU37850 lncRNA downstream 151421 32002390 ~ 32002823 (+) True G33432
TU38003 lncRNA downstream 357954 32208923 ~ 32209125 (+) True G33576
XM_021598657.2 mRNA upstream 68278 31668656 ~ 31782195 (+) False LOC110521218
XM_021598665.2 mRNA upstream 68278 31668656 ~ 31782195 (+) False LOC110521218
XM_036975692.1 mRNA upstream 68278 31729095 ~ 31782195 (+) True LOC110521218
trnah-gug mRNA upstream 182898 31667504 ~ 31667575 (+) True trnah-gug
XM_021598641.2 mRNA upstream 188326 31639629 ~ 31662147 (+) False LOC110521202
XM_021597495.2 mRNA downstream 113595 31964564 ~ 31966876 (+) True LOC110520271
XM_021598719.2 mRNA downstream 129316 31980285 ~ 31989249 (+) True LOC110521263
XM_021598789.2 mRNA downstream 248240 32099209 ~ 32199761 (+) False LOC110521304
XM_021598780.2 mRNA downstream 264651 32115620 ~ 32204312 (+) True LOC110521304
XM_021598800.2 mRNA downstream 353506 32204475 ~ 32215553 (+) True zgc:162879
TU34064 other upstream 2597255 29192729 ~ 29253218 (+) False mef2aa
TU33696 other upstream 2782678 29065656 ~ 29067795 (+) True LOC110520661
TU32543 other upstream 3802111 28047626 ~ 28048362 (+) True G28416
TU32398 other upstream 3995519 27853757 ~ 27854954 (+) True G28285
TU32393 other upstream 4005462 27844640 ~ 27845011 (+) True G28280
TU37697 other downstream 105561 31956530 ~ 31961547 (+) True G33284
TU38120 other downstream 599885 32450854 ~ 32452385 (+) True G33681
TU38224 other downstream 762104 32613073 ~ 32617316 (+) False G33768
TU38223 other downstream 762793 32613762 ~ 32617684 (+) True G33768
TU39239 other downstream 1471798 33322767 ~ 33323605 (+) True sema3e

Expression Profile