RNA id: TU38566


Basic Information

Item Value
RNA id TU38566
length 1106
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G34094
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32207994 ~ 32209099 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaggagtggctttgggacaagtctctgaatgtccttgagtggcccagccaaagcccggacttgaacctgatcgaacatctctggagggctgaaaatagctgtgcagtgatgctccctatccaaccagacagagcttgagaagatctgcaaagaagaatgggagcaactccccaaatacaggtgtgccaagcttgtggcgtcatacccaagaagactaggctgtaatcgctgccaaaggctcttcaacaaagtactgagtaaggcttatttcagaataaggctgtaacgtagcaacatttagaaaaagtcaaggggtctgaatactttccgaatgagaCTCAAGATCCAGTTGTTTATCTGATCCAACGTACCTGAGTCAGTTCACTTATTTGGTTCTGTAGTTTGTCAACATCCTGCCTGGAACTGTTGAGTTCAGATTCCCCTTGAGACTACAATGAGAAGGTTTCAATTAAGATTAAGCATCAATTGAAATCATATTCACAATTAAGACTGCATGAATCTAGCTAAATAAAGTACTGCAAACATAAGCGTGGCAATCCTAGGGAAAGATGAAATAACCTTTCAACACCAACAATAATAGGTCAATAGATGAAATATGTCACAAAACCTGTTTCAAATAGATGACACCTACCTTTAACAACCTATCCATAACAGTATGCAGATCTGCCACCTCATTCTCATGCCTTCTCTGGAGTGCCGCCATGACTCCCTCCATTCTCTTATGCTCCTACAGACAAGAAACCCAAGGAGAGACAACTTTGCTCATTGGCTCTGAACTAAAAGAGGGGCTTTCACAAAACTGTAGAAAGGGGCCTTTGTGAGAGTTTGAGCTAACTGCTCTCCCTTCTCTAAAAGGTACTTCCCCTACCACAAATATGCGGATAAACACCTGTGCCGAGGCCCCTCTTGAAATTAAACAGTTTAATCTTAATTTCCAACAAACTATTTGCCCAAGTCTATTATATTAAACTTTTTCtcaccattaaaaaaaaaaaaattataaacattttctAAGGTATGTTTTCAATGACACCAATGCCTTTTTAATGACTTAGCTtgctttgtttgtttttagttctTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38565 lncRNA downstream 2953 32204528 ~ 32205041 (-) True G34093
TU38564 lncRNA downstream 4692 32202771 ~ 32203302 (-) True G34092
TU37866 lncRNA downstream 194159 32013627 ~ 32013835 (-) True G33448
TU37855 lncRNA downstream 201163 32006624 ~ 32006831 (-) True G33437
TU37803 lncRNA downstream 218745 31987359 ~ 31989249 (-) True G33386
TU38567 lncRNA upstream 112 32209211 ~ 32209423 (-) True G34095
TU38570 lncRNA upstream 5653 32214752 ~ 32215030 (-) True G34098
TU38568 lncRNA upstream 6396 32215495 ~ 32217040 (-) True LOC110521435
TU38607 lncRNA upstream 62953 32272052 ~ 32272266 (-) True G34135
TU38608 lncRNA upstream 64316 32273415 ~ 32273615 (-) True G34136
XM_036975695.1 mRNA downstream 210332 31989300 ~ 31997662 (-) False LOC110521251
XM_036975701.1 mRNA downstream 210332 31989300 ~ 31997662 (-) True LOC110521251
XM_021598687.2 mRNA downstream 365991 31808912 ~ 31842003 (-) True LOC110521239
LOC110532195 mRNA downstream 413842 31791379 ~ 31794152 (-) True LOC110532195
XM_021598620.2 mRNA downstream 569296 31614176 ~ 31638698 (-) True LOC110521169
XM_021598981.2 mRNA upstream 6404 32215503 ~ 32217278 (-) False LOC110521435
XM_021598873.2 mRNA upstream 9659 32218758 ~ 32267580 (-) False LOC110521366
XM_021598882.2 mRNA upstream 9659 32218758 ~ 32267580 (-) False LOC110521366
XM_021598898.2 mRNA upstream 9659 32218758 ~ 32269165 (-) False LOC110521366
XM_021598889.2 mRNA upstream 9659 32218758 ~ 32270230 (-) True LOC110521366
TU37804 other downstream 221844 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 763045 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1075103 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 2927294 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 3503638 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 898020 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 1233269 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 1658459 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 2068601 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 2132463 34341562 ~ 34381232 (-) True G36196

Expression Profile