RNA id: TU38695


Basic Information

Item Value
RNA id TU38695
length 999
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G34210
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32444925 ~ 32446401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatatAGGACCTCCCTTCTGTTTAATGCAATAGAAACAACTTCAGGAGATGACAAGTGAACCACCGTCTCAGTCTCAAGACATACATGAACAGTGAACAAAATTATGAAAAATGTCGAGTTACATTAATCATTTCCATTTTTCTATTCCAAATAATATTCAACTACTTCACATAGGCACCAGATCAGATCGGTCATTAATCCTCAATGAGTATTAAATTAACGCATTTCAAATAGATCTTCATGTAGTTTACTTACAGTAGTACAAAATAGAAGTTAACAATTTCAAACTGGGGATTAAATGTAAGTACTTCAAAACTATTACTCAATATTAAATTAGAGTATTTCAAATATATTACTGTGATGTACAATAGACAAATCAGTGTGTTCTTCTCAGAtctcagggagaggttgaatccATACCCTGGAATTTAGcCTGCAGGTGTTTGTATGTCTTGGCCAGATCTACATTGGTGCGCCCCGGCTGGAAGGGATAGGACCACAGGATGGTGTTCCAGGATAGACCAAACCTCGACACAGGTAACGCTCCTCGTCACGGCTGaatttcctcctctccctagtCAGAGAGGGTTTTCCCATGAACAGAGTCTCCTGCTGATCATCAATGGCACCATCTTCCTCATGATCTgttctcctgtctgtgtgtgtcaacgagagagagaacattattctgtgtgtgtgtgtgtgtgtgtgtgtcagtcatagagaaagagagtgagagacagaaagcaaAGAACTGATGTCACGCCTCATTGAGAGCAGAGACCAACAGTTGTCAGAGCGTATTGAACTAAACACAgacaatctctccctctcttctccattgGAGTGACATTACGTCACTCGTCACACCTAATACAGCTGCCTGCAACCAGAACAATAGTACACAAGGGAGAGATTCAatggccagagagggagagagactgagcaagagagaggggcagagaaagaacagagaaaaGCGATAAAGACAAAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38645 lncRNA downstream 111599 32331943 ~ 32333326 (-) False LOC118964447
TU38646 lncRNA downstream 111599 32331943 ~ 32333326 (-) False LOC118964447
TU38647 lncRNA downstream 111599 32331943 ~ 32333326 (-) True LOC118964447
TU38649 lncRNA downstream 114439 32328711 ~ 32330486 (-) True LOC110521442
TU38611 lncRNA downstream 168249 32276446 ~ 32276676 (-) True G34139
TU38733 lncRNA upstream 30733 32477134 ~ 32477355 (-) True G34242
TU38739 lncRNA upstream 56927 32503328 ~ 32503549 (-) True G34248
TU38749 lncRNA upstream 70812 32517213 ~ 32517457 (-) True G34257
TU38752 lncRNA upstream 76278 32522679 ~ 32523065 (-) True G34260
TU38803 lncRNA upstream 168093 32614494 ~ 32616115 (-) True G34298
XR_002473147.2 mRNA downstream 19676 32423864 ~ 32425249 (-) True LOC110521450
XM_036975799.1 mRNA downstream 22019 32416697 ~ 32422906 (-) True pdp2
XM_036975800.1 mRNA downstream 22020 32416697 ~ 32422905 (-) False pdp2
XM_036975828.1 mRNA downstream 22150 32416697 ~ 32422775 (-) False pdp2
XM_036975811.1 mRNA downstream 22151 32416697 ~ 32422774 (-) False pdp2
XM_021598936.2 mRNA upstream 4446 32450847 ~ 32456906 (-) False LOC110521397
XM_021598930.2 mRNA upstream 4446 32450847 ~ 32457200 (-) False LOC110521397
XM_036975868.1 mRNA upstream 4446 32450847 ~ 32457200 (-) True LOC110521397
XM_021598730.2 mRNA upstream 38844 32485245 ~ 32500832 (-) False LOC110521272
XM_021598738.2 mRNA upstream 38844 32485245 ~ 32500832 (-) False LOC110521272
TU37804 other downstream 458775 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 999976 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1312034 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 3164225 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 3740569 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 660718 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 995967 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 1421157 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 1831299 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 1895161 34341562 ~ 34381232 (-) True G36196

Expression Profile