RNA id: TU38120


Basic Information

Item Value
RNA id TU38120
length 1448
RNA type TUCP
GC content 0.50
exon number 2
gene id G33681
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32450854 ~ 32452385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAACAATCTTATTTTATTTTCACAACCAGACCATCACCTTTAATACATTCCTTCAAACCACTTCTCACCACCAAGAAAATATAATAAGGTCACCTCCGTTTCAGAGTTAAAGAGGAAGGATTGAGAGAGTCCAAGCATGAATGTACATCATAGAATGTAGGCCGATTTCAAACGTTGTTACAATTCATCAGGCGTACACACCAAGGCAAACGTCTTGTCATACATAGTTACCACATAGTTACTGTAAGTGTTCTACTATGCAGTGTTATGTCTATATGGCTCAGAGGGCGATGATGGGTACACTTCTGCCCTGGCCACCCATCACCAAATCCCTTTAGTCAACCTACACTCAGAAAGAAAGGCATGTCTATTACCTGGGGTCTAATCATTATTCCAAAATGTTTCGCAACAGAAACTAgaatttctattggacaaattcaggtaggtcccacCCAGTTTAATTCCGTTTGCGTACGCTTggttctgtttggttcctagGGAATACATCCCAGGTCTCAGATTATCTGATTGCTACTTCACGGTCTTAGTTTTCCCTTTAGCCTTCTCAGATCAAAGTTGTACTCTTTTTTTATAAATTTTTTTTCTGCTGCGTCTGCCTTTTTTAGAACGTCATTGTCCATTTTTTTCttctagtttttatttttattttctccgCCCATATCAGCTCAGTGGACACGTCACCTTCCGGAATGTCGTCTGCTATGACATCATTGACCATGATGTCATCGGCCGTCAGGTCTAAGTGGTTGAAGAATCCGCTTTGCTCAGCTCGCTGCCCATGACATCACACAGAAGCTTCTCCGCCATGGTTGCTGGCTTCTCCGGGGTTTCTTTGGACTCTTCTGGGACGGAGACAGAATTCCAGGCAGCCTTTACTTTGTCGTCATAGCATTCTGCACCCCCCAGGTCTGTGGGCTGGTCTGGGGCAGATCTGTGGGAGGGGGGAGCATCGAGGGGCTTAGGGGTCAGCTCAGGGACACCCAGGTCCagaagaggggcgggggaggGGAAGGGCTCTGGAATGACTGGCTGTAGGAGGAACTCCTGGGAGAGGTTTGGCTCTGGGACAGCCTCCTGTTCTATGACGACTGGCTTTGGCTCCGGGACGACTGGCTTTGGCTCCGGGACGACTGGCACTGGTTTGCTGACTGACACCAGGGGCTCGGGTTCAGGCGGTGCTGGGGCTACTAGTGGGACGCTCACCAGCTCCTCCAATGAGGGCTCCGTCTCTGGCTGCTTGGGGGGCTCTGGCTCAGCCTCCTGTACCAGTGCTGGCACTGATTCGACTACTGGTTCAGTCGCCTCTGCAACCACCACTGGCGCATCAGCTACTGCCTCCACCACAGCTTCCTGCGTGTCGATTGCCTCCTCTGCAGCCTTCTGCTCGGCTGGTGCAGTGTCCCGTCTTCTGCTGATCTTGTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38115 lncRNA upstream 4749 32443910 ~ 32446105 (+) False terb1
TU38114 lncRNA upstream 4749 32443996 ~ 32446105 (+) True terb1
TU38105 lncRNA upstream 28965 32421338 ~ 32421889 (+) True G33667
TU38068 lncRNA upstream 76188 32372396 ~ 32374666 (+) True G33639
TU37902 lncRNA upstream 105519 32342865 ~ 32345335 (+) True G33478
TU38140 lncRNA downstream 22513 32474898 ~ 32475128 (+) True G33701
TU38141 lncRNA downstream 28082 32480467 ~ 32480687 (+) True G33702
TU38142 lncRNA downstream 28397 32480782 ~ 32481063 (+) True G33703
TU38149 lncRNA downstream 58585 32510970 ~ 32511533 (+) True G33710
TU38178 lncRNA downstream 98345 32550730 ~ 32551971 (+) True G33730
XM_036975770.1 mRNA upstream 3976 32436906 ~ 32446878 (+) False terb1
XM_036975772.1 mRNA upstream 3976 32436906 ~ 32446878 (+) False terb1
XR_005051470.1 mRNA upstream 3976 32437162 ~ 32446878 (+) False terb1
XM_036975775.1 mRNA upstream 3976 32437164 ~ 32446878 (+) False terb1
XM_021598921.2 mRNA upstream 89956 32353368 ~ 32360898 (+) True si:dkey-30c15.2
XM_021598957.2 mRNA downstream 29077 32481462 ~ 32485466 (+) True si:dkey-30c15.13
XM_021599015.2 mRNA downstream 281134 32733519 ~ 32751025 (+) False LOC110521454
XM_021599033.2 mRNA downstream 283735 32736120 ~ 32751025 (+) False LOC110521454
XR_002473150.2 mRNA downstream 283735 32736120 ~ 32751025 (+) False LOC110521454
XM_021599007.2 mRNA downstream 283736 32736121 ~ 32751025 (+) False LOC110521454
TU37697 other upstream 489307 31956530 ~ 31961547 (+) True G33284
TU37662 other upstream 599885 31850473 ~ 31850969 (+) True G33249
TU34064 other upstream 3197636 29192729 ~ 29253218 (+) False mef2aa
TU33696 other upstream 3383059 29065656 ~ 29067795 (+) True LOC110520661
TU32543 other upstream 4402492 28047626 ~ 28048362 (+) True G28416
TU38224 other downstream 160688 32613073 ~ 32617316 (+) False G33768
TU38223 other downstream 161377 32613762 ~ 32617684 (+) True G33768
TU39239 other downstream 870382 33322767 ~ 33323605 (+) True sema3e
TU39330 other downstream 939338 33391723 ~ 33398659 (+) False LOC118964465
TU39329 other downstream 947066 33399451 ~ 33400437 (+) True LOC118964465

Expression Profile