RNA id: TU38739



Basic Information


Item Value
RNA id TU38739
length 222
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G34248
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32503328 ~ 32503549 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTGTTTCttaatgtctgcgcaagagtgaaggtttcattgagttgAGATACTTttacacatataacacactgtggctgaggaaaggcactactcccaatataagtgaacctcAAAtcatggtccaacgtccctgtctgttgttcagtgctttcccaggtaagggggcagtagctcttcggctgcatcagattcgcaactgtcagtgtccatgctagctgggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38733 lncRNA downstream 25973 32477134 ~ 32477355 (-) True G34242
TU38695 lncRNA downstream 56927 32444925 ~ 32446401 (-) True G34210
TU38645 lncRNA downstream 170002 32331943 ~ 32333326 (-) False LOC118964447
TU38646 lncRNA downstream 170002 32331943 ~ 32333326 (-) False LOC118964447
TU38647 lncRNA downstream 170002 32331943 ~ 32333326 (-) True LOC118964447
TU38749 lncRNA upstream 13664 32517213 ~ 32517457 (-) True G34257
TU38752 lncRNA upstream 19130 32522679 ~ 32523065 (-) True G34260
TU38803 lncRNA upstream 110945 32614494 ~ 32616115 (-) True G34298
TU38807 lncRNA upstream 112644 32616193 ~ 32616530 (-) True G34300
TU38812 lncRNA upstream 117488 32621037 ~ 32624078 (-) False G34304
XM_021598754.2 mRNA downstream 2493 32485245 ~ 32500835 (-) True LOC110521272
XM_021598746.2 mRNA downstream 2494 32485245 ~ 32500834 (-) False LOC110521272
XM_036975742.1 mRNA downstream 2495 32485245 ~ 32500833 (-) False LOC110521272
XM_021598730.2 mRNA downstream 2496 32485245 ~ 32500832 (-) False LOC110521272
XM_021598738.2 mRNA downstream 2496 32485245 ~ 32500832 (-) False LOC110521272
XM_036975974.1 mRNA upstream 26717 32530266 ~ 32552873 (-) False LOC110532201
XM_036975979.1 mRNA upstream 26717 32530266 ~ 32552873 (-) False LOC110532201
XM_036975983.1 mRNA upstream 26717 32530266 ~ 32552874 (-) False LOC110532201
XM_036975987.1 mRNA upstream 26717 32530266 ~ 32552874 (-) False LOC110532201
XM_036975971.1 mRNA upstream 26717 32530266 ~ 32601513 (-) False LOC110532201
TU37804 other downstream 517178 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 1058379 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1370437 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 3222628 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 3798972 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 603570 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 938819 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 1364009 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 1774151 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 1838013 34341562 ~ 34381232 (-) True G36196

Expression Profile