RNA id: TU38224



Basic Information


Item Value
RNA id TU38224
length 458
RNA type TUCP
GC content 0.51
exon number 2
gene id G33768
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32613073 ~ 32617684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgttacaccagcaggttgttatcacctctcccatgtgttacaccagcaggttgttatcacctctcccatgtgttacaccagcaggttgttatcatatctcccatgtgttacaccagcaggttgttatcacctctcccatgtgttacaccagcaggttgttatcacctctcccatgtgttacaccagcaggttgttatcatctctcccatgtgttacaccagcaggttgttatcatctctcccatgtgttacaccagcatgttgttatcatctctcccatgtgttacaccagcaggttatcacctctcccatgtgttacaccagcaggttgttatcacctctcccatgtgttacaccagcaggttgttatcatctctcccatgtgttacaccagcaggttgttatcatctctcccatgtgttacacctGCAGGTTATCacctctcccatgtgttacacc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU38178 lncRNA upstream 61102 32550730 ~ 32551971 (+) True G33730
TU38149 lncRNA upstream 101540 32510970 ~ 32511533 (+) True G33710
TU38142 lncRNA upstream 132010 32480782 ~ 32481063 (+) True G33703
TU38141 lncRNA upstream 132386 32480467 ~ 32480687 (+) True G33702
TU38140 lncRNA upstream 137945 32474898 ~ 32475128 (+) True G33701
TU38230 lncRNA downstream 3679 32620995 ~ 32641296 (+) True G33772
TU38265 lncRNA downstream 43717 32661033 ~ 32661289 (+) True G33806
TU38268 lncRNA downstream 47561 32664877 ~ 32665175 (+) True G33809
TU38271 lncRNA downstream 52346 32669662 ~ 32669873 (+) True G33812
TU38272 lncRNA downstream 55417 32672733 ~ 32673005 (+) True G33813
XM_021598957.2 mRNA upstream 127607 32481462 ~ 32485466 (+) True si:dkey-30c15.13
XM_036975770.1 mRNA upstream 166195 32436906 ~ 32446878 (+) False terb1
XM_036975772.1 mRNA upstream 166195 32436906 ~ 32446878 (+) False terb1
XR_005051470.1 mRNA upstream 166195 32437162 ~ 32446878 (+) False terb1
XM_036975775.1 mRNA upstream 166195 32437164 ~ 32446878 (+) False terb1
XM_021599015.2 mRNA downstream 116203 32733519 ~ 32751025 (+) False LOC110521454
XM_021599033.2 mRNA downstream 118804 32736120 ~ 32751025 (+) False LOC110521454
XR_002473150.2 mRNA downstream 118804 32736120 ~ 32751025 (+) False LOC110521454
XM_021599007.2 mRNA downstream 118805 32736121 ~ 32751025 (+) False LOC110521454
XM_036976013.1 mRNA downstream 118805 32736121 ~ 32751025 (+) False LOC110521454
TU38120 other upstream 160688 32450854 ~ 32452385 (+) True G33681
TU37697 other upstream 651526 31956530 ~ 31961547 (+) True G33284
TU37662 other upstream 762104 31850473 ~ 31850969 (+) True G33249
TU34064 other upstream 3359855 29192729 ~ 29253218 (+) False mef2aa
TU33696 other upstream 3545278 29065656 ~ 29067795 (+) True LOC110520661
TU39239 other downstream 705451 33322767 ~ 33323605 (+) True sema3e
TU39330 other downstream 774407 33391723 ~ 33398659 (+) False LOC118964465
TU39329 other downstream 782135 33399451 ~ 33400437 (+) True LOC118964465
TU39545 other downstream 1084461 33701777 ~ 33703462 (+) False G34963
TU39546 other downstream 1084461 33701777 ~ 33703462 (+) True G34963

Expression Profile


TU38224 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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TU38224 Expression in each Bioproject

Bar chart with 11 bars.
TU38224 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 70.
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