RNA id: TU38857



Basic Information


Item Value
RNA id TU38857
length 208
lncRNA type intronic
GC content 0.50
exon number 1
gene id G34341
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32673212 ~ 32673419 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agcgcaaactggctctaaccagaatagaaagaggagtgggaggccacggtgcacaactgagcaagaggacaagtacattagagtgtctagtttgagaaacagacgcctcacaagtcctcaactggcagcttcattaaatagtacctgcaaaacaccagtctcaacgtcaacagtgaagaggcgactccgggatgctgtccttctaggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38855 lncRNA downstream 1154 32671858 ~ 32672058 (-) True G34339
TU38849 lncRNA downstream 9162 32663819 ~ 32664050 (-) True G34334
TU38841 lncRNA downstream 13415 32659555 ~ 32659797 (-) True G34330
TU38812 lncRNA downstream 49134 32621037 ~ 32624078 (-) False G34304
TU38813 lncRNA downstream 49134 32623159 ~ 32624078 (-) True G34304
TU38859 lncRNA upstream 2401 32675820 ~ 32676233 (-) True G34343
TU38870 lncRNA upstream 7496 32680915 ~ 32681155 (-) True G34353
TU38872 lncRNA upstream 9244 32682663 ~ 32682890 (-) True G34355
TU38873 lncRNA upstream 9542 32682961 ~ 32683170 (-) True G34356
TU38875 lncRNA upstream 13759 32687178 ~ 32687392 (-) True G34358
XM_036975929.1 mRNA downstream 25155 32530266 ~ 32648057 (-) False LOC110532201
XM_036975922.1 mRNA downstream 25156 32530266 ~ 32648056 (-) False LOC110532201
XM_036975990.1 mRNA downstream 43729 32530266 ~ 32629483 (-) False LOC110532201
XM_036975914.1 mRNA downstream 43730 32530266 ~ 32629482 (-) False LOC110532201
XM_036975932.1 mRNA downstream 43730 32533391 ~ 32629482 (-) False LOC110532201
XM_021599082.2 mRNA upstream 87778 32761197 ~ 32783714 (-) False LOC110521494
XM_021599091.2 mRNA upstream 87778 32761197 ~ 32783976 (-) False LOC110521494
XM_021599101.2 mRNA upstream 87778 32761197 ~ 32783979 (-) True LOC110521494
XR_005051510.1 mRNA upstream 166026 32839445 ~ 32844732 (-) True LOC118964459
XM_036976052.1 mRNA upstream 201497 32874916 ~ 32924599 (-) False grm3
TU37804 other downstream 687062 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 1228263 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1540321 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 3392512 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 3968856 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 433700 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 768949 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 1194139 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 1604281 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 1668143 34341562 ~ 34381232 (-) True G36196

Expression Profile