RNA id: TCONS_00027336


Basic Information

Item Value
RNA id TCONS_00027336
length 2201
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id XLOC_013437
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 24497624 ~ 24561884 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCACATTCAGATGCAGGGTGCAACTCTGAACACGGTGCAACAGAGTGGCATAACATGCTGTGTTTCTGGGCCACTGAGCAGCACGTCAAACTGACAGAGAGAGAACAAAAAGATGGAGAGAgtcgcagagagagagaggggaagTTACTTGGGAATCCAGACATGAGCCCATCTGCAGAGCGAGTTTTCACCACTGGGTTGCGGTCTATATTGGATCAGCTGATCGGCATGGCCGTTTAACATCAATGTCCGTGTGTTTGCTGAACATTGCCAGAGCTGTTCTGACTGTCCATTTGCAGCCTTTTCTGAAGTGCCGACTCCATCGTTGCTCACCGCAAGCAGCACCATATTTCTTCATCACTGCTGTGTTAAAGATGCTTGCAGCATTTCCACGTCTTCTCTGGCATAGGGGTGCGCAGGTTCCCCCTCCTCATCGCTTCCACCTGCCAGACTGAGACCGCCCGTCTTACTAATCTGTCTTTGGGGAGAACGACAACGGGAGTCGGCAAAGGACGCGGCACCTCCGGGCCCCATAAATCCCGGCGGCACCCGATTACCCATTTCAGGCCACAAAGTCAAAGAACTGGGCATTAAGTGGAGCAAGTTGCTTGGCACCAAGGACAAAGCTGACAGGAAACATAAGGCCCCCACATGTGGCCCCGGACGTGAAGAATTGGTCCGCTTTCGAGGACGTACACTATACGGATGAGACGGCCCCTCTCAAATTAGCACTGAGCAGGGTGACTGCCGAAACGCCAGCTGATGAAGAGACACGCGGCTGCCACTATTTGCGCCGCTAAGGCATTCATCAAATTAATTACTGCTGTGCCCAACCACCTCTCTGATACCTCTTTATTTTGAGTCCTGTAAATGGGGCCTCAGACGAGTCCTGACAGGGAGCCCTAATACACACACTGCCTCTTCTACAGCAACATAATTAATTGAAAACTTCGCTGGCTTGACAAATTGGAATGATGAATCTATCTTCTATGAATAGCTtaaggaaagagaaagagagagagagagagaacgaggaagaaaaaaatgcataatCAGTCAAAAATGTAGACGCAACATCTCTCTCTCGCTGGCTTTGCTGCGTATTGAGAGCCATTAGGGCCGAGAGGAGCCGTGGCGCTGCGAAAAGACTGACTTTCCTTCCATCCACGTCTCAATTGATAACTTTGGCTCTTCGATTTAATAGAGCGGTCAAGGTGGAGCTGTTCTTCTGTATGGTTCAAGAGAAATAAAGAGAGgcgtgtgtgtttgtgaacaGTCATACAGTACATGTCTATGCAGGAAAATATGAGAAGGTTGCAGATGTGAAGGACACACCTTTTCCGTGGGAGGCCGGCAGACTGATTTCAGTTCAGAGGGAAGCGAGACAGGACTACAGAACTAAATAAAGTCTCAGATGGATGAAACTGAACTGCCGCTAGAAAAACCTGCAAGACAATGAGATTCCCTGTGCCCCCGGAGAAATGTTTACATGCTCTTCAAATACACgtgaaatatatacatatacagtttacAGCGTTATCCTTTCATGACTGTGCAGTATAGAGACATAAGGCAGGTCACTGAAGGTGAATAGTGTTAACAATCagctacaattcaccacacttccTTAGTTCAGGGGTTCCCCTTTCAGCCTGCGAcgagtgactcgtgacccccaatatcttcTGTGGTGGTTAAAAATTACAGAAagcttgcatgcaatggcacacacacagcaacagacccaagtctattcttcacaGATTTTTCTTTATGTAAGtcagagctgtaaatgggccagaaagtttaacctggtgttataaaatcaatctgctgcaccAGACaccattgctgtgtctttaatataatgtaattaccccaggggtcgcaatccaacagaactagtaactataagctactatagtaactatatacagtagtgtagtaACTATAACttataattttttcttttgagtaggttatggataaaatatggtaattattatggtttaataaaaataatagatttttggaaatcaccaggcgacccctctttcattgtcctgcgacccctcggggggtcccgactcCCACTCTGAGGACCACTGCCTTAGCTGATTGATTATTTGTATTACGTGTTTACTAAAATGTAAACTGTTTAAATGTGGAAATATTGTCATACATTACATGCATCTGATTGG

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0070069 cytochrome complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027325 lncRNA downstream 20714 24372662 ~ 24476910 (-) False XLOC_013435
TCONS_00027328 lncRNA downstream 20714 24380588 ~ 24476910 (-) False XLOC_013435
TCONS_00027327 lncRNA downstream 20734 24380588 ~ 24476890 (-) False XLOC_013435
TCONS_00027326 lncRNA downstream 20734 24380588 ~ 24476890 (-) False XLOC_013435
TCONS_00027324 lncRNA downstream 20739 24372662 ~ 24476885 (-) False XLOC_013435
TCONS_00027341 lncRNA upstream 178955 24736359 ~ 24759440 (-) True XLOC_013438
TCONS_00026530 lncRNA upstream 184095 24741499 ~ 24746319 (-) False XLOC_013439
TCONS_00026531 lncRNA upstream 184095 24741499 ~ 24746401 (-) False XLOC_013439
TCONS_00026971 lncRNA upstream 187386 24744790 ~ 24746333 (-) True XLOC_013439
TCONS_00026537 lncRNA upstream 432864 24990268 ~ 24996634 (-) False XLOC_013441
TCONS_00026521 mRNA downstream 622254 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA downstream 622405 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA downstream 622695 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026514 mRNA downstream 1743987 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 1743987 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026532 mRNA upstream 376069 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 381288 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026534 mRNA upstream 423480 24980884 ~ 24988645 (-) True XLOC_013440
TCONS_00026538 mRNA upstream 438615 24996019 ~ 24996634 (-) True XLOC_013441
TCONS_00026539 mRNA upstream 470091 25027495 ~ 25051846 (-) True XLOC_013442
TCONS_00026527 other downstream 20741 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026525 other downstream 21510 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other downstream 181325 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026523 other downstream 474611 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026516 other downstream 1635157 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026529 other upstream 2783 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026536 other upstream 432864 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026541 other upstream 601257 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026548 other upstream 958489 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026554 other upstream 1197434 25754838 ~ 25758277 (-) False XLOC_013451