RNA id: TU39005


Basic Information

Item Value
RNA id TU39005
length 870
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G34457
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32835246 ~ 32836115 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaaccttaagaattctGAGATAATGTCTCAACTTAGCCTTGGAACGATACAGAGAAGTAACCAAACACTtcaaatttgacgtttgagaaacatggatgagcgtctaattctgacgtgagactgtgagagcttgttgcactgtacagtatatgaaaataatgtattttataaTCAGACAGGGCAAGTGCATTTTCTAATATTGACCACTTGATGTCAGTCATGCTCTAGTCTAGACAGAGCTCTGGAAGTGACATCATACCAACAGGACTGACTTCATCCCAACTGCAAGGCAGCACATTTTAAACTATGACATTTGAACAAAAAAGGAATCCCATATTGCTCCTCATTCCGTGAACCACGATcattttaaacaaacaaaaagttgaccaactggggatattttagtccccacaaggtcaaattctttttctagggggtttagggttaaggttagaattagggttagtgttaggagctagggttacttttagggttaggagccagctttagggttaggttaaggggttagggttaaggtttttgggttagggttaaggttaggattaggagctaagtttaggagctagggttaggtgtaggtttagggttagggtaagagtatgggttaggtttagggttaagggttaggggaaaataggattttgactgggactgaattgtgtgtcctcacaaggttagctgtacaagacggcacgtgtgtgtgtgtctaagtttGCTAGGTAGTGAGTGTAAACTAAATCTCTGTTTACATCCTCAGACAAAGCAGCTCATGCATGTTTTATCACCAGCGCATTGTTCAATTTGTCCATGAGTAACACTGCCCTGCCACGAAGCTGCTTaacccaggg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39007 lncRNA downstream 62 32834667 ~ 32835184 (-) False G34458
TU39006 lncRNA downstream 62 32834835 ~ 32835184 (-) True G34458
TU38954 lncRNA downstream 29120 32778661 ~ 32806126 (-) True G34424
TU38937 lncRNA downstream 69577 32763255 ~ 32765669 (-) True G34409
TU38865 lncRNA downstream 74472 32760172 ~ 32760774 (-) True G34348
TU38967 lncRNA upstream 31516 32867631 ~ 32904939 (-) False grm3
TU38972 lncRNA upstream 31516 32867631 ~ 32874505 (-) False grm3
TU38966 lncRNA upstream 56741 32892856 ~ 32924590 (-) True grm3
TU39033 lncRNA upstream 66271 32902386 ~ 32902678 (-) True G34484
TU39059 lncRNA upstream 117508 32953623 ~ 32953861 (-) True G34510
XM_021599101.2 mRNA downstream 51267 32761197 ~ 32783979 (-) True LOC110521494
XM_021599091.2 mRNA downstream 51270 32761197 ~ 32783976 (-) False LOC110521494
XM_021599082.2 mRNA downstream 51532 32761197 ~ 32783714 (-) False LOC110521494
XM_036975932.1 mRNA downstream 205764 32533391 ~ 32629482 (-) False LOC110532201
XR_005051510.1 mRNA upstream 3330 32839445 ~ 32844732 (-) True LOC118964459
XM_036976052.1 mRNA upstream 38801 32874916 ~ 32924599 (-) False grm3
XM_036976060.1 mRNA upstream 38801 32874916 ~ 32924599 (-) False grm3
XM_021599223.2 mRNA upstream 888734 33724849 ~ 33729966 (-) True lrrc4.2
XM_021599259.2 mRNA upstream 1108719 33944834 ~ 33953935 (-) False rbm28
TU37804 other downstream 849096 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 1390297 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1702355 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 3554546 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 4130890 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 271004 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 606253 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 1031443 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 1441585 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 1505447 34341562 ~ 34381232 (-) True G36196

Expression Profile