RNA id: TU39673


Basic Information

Item Value
RNA id TU39673
length 1355
RNA type TUCP
GC content 0.51
exon number 2
gene id G35075
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33107119 ~ 33108497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAATATGATTCTATGTTCATTCTAGACATAATATGTGATTATCATAGTAGCAGTATAATATGTCCTATCTAAGCTGAACTAGAGCATGCAGTTTCTCCTGTACATGTTATAGAAGTATTTACAGTCATTCAACATGAATGCATCTGATTAAGACACAAAACACTGAGCTCTGGGCACGTCTCATTCGGCTAAAATGGAGTTATAGCTAGAAGGGATGCAGCTAATGTCAAGGCCATGTCACACTCTCACTGTGACCTTAGACTTTGAACAAACCTACCCCCACACCGAAAGCCAGCTTAGTTAGTTAATGCTTGCTAACTTGCAAGGGCGGTAGTTAAAATTGTCAAAAAAGTTGTTTGTAGCAAGTGTAGCCAATATCAGTTTGACAACTAAGGCAAAGTGATTGCAGTGATGTTCCCCCATGTACTACGATCAAAACATAATGATTCTAAACACTCTCCAAAGTCCCAAATTCAAGTTCTAAACTTTCTCTGGAATTTAAAATAACTTTTGACATTGGCTGCAGCCCCTCTTAAACAAGGTTACTTTGATACGTCAGTAAAGGCACTGAGACACTATTGAGACACAGCCATAGGGATCATGGGTAGTGTAGTTTGAGAAGCCAGGCCTACATGAGCCCTATGAGTGTTTGACTGGTATGAAAGAAGATTATACCTCTGTAAGAAGAGTCTATCGTGGTCCATACTATCAACTGCAGGATCCCAGTTCCCATGTCGTTATAACTGTCCCTCAACTAAACATGATCATCTTCCCTATTGTCCCCTCTTACACCTATAAACATTGATGGTCTCCCCTAATATTTTGACTGATTACACTTTTGGCTACTGCTGTTTCAGTAGCAACTCCTCCTCTTTGTTACCCTCACCACTTCATCCACTCCTCCACTGCCCTACCCTCTCGCCATccttctctttatccctctctgcACCCCTCTCTCCATGGTGTCGTCTGTTCCTGCTCTTCTTCAACTCCTGGATGTGTTTCCATTTTCCTGCTCCttgccctctcccccctctcctattGGCCGGCCTCTTTTCCAGCCACAGCGAATCACAGTAGTCCTCCAGCGAGCCAATGGGAGAACTCATCACACGCAGATAATCCTTATAGCGCTGACGAGACTCAGCCCCGGGGCGAACTTCGACGCTGGGGTCCTCGCTGGGCTTGGTCCGCCCATCCAGATGCCCGTAGGGAATGAGACGAAGTGTAAGGCGGAGCAAAGTGTGTGTGAAGTGAGTGTGTTCCtgtgccacacacacatacacgccagCGTCGGCAGGATGGAGAGAGCGGATGAGAAAACCACGGTCTGTAAGGACCACTCTGTCATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39649 lncRNA downstream 47857 33051299 ~ 33059262 (-) True G35052
TU39059 lncRNA downstream 153258 32953623 ~ 32953861 (-) True G34510
TU38966 lncRNA downstream 182529 32892856 ~ 32924590 (-) True grm3
TU38967 lncRNA downstream 202180 32867631 ~ 32904939 (-) False grm3
TU39033 lncRNA downstream 204441 32902386 ~ 32902678 (-) True G34484
TU39776 lncRNA upstream 128667 33237164 ~ 33239834 (-) True G35177
TU39886 lncRNA upstream 292688 33401185 ~ 33481308 (-) False G35272
TU39882 lncRNA upstream 369024 33477521 ~ 33481308 (-) True G35272
TU39991 lncRNA upstream 444611 33553108 ~ 33553484 (-) True G35375
TU39992 lncRNA upstream 445543 33554040 ~ 33554344 (-) True G35376
XM_036976052.1 mRNA downstream 182520 32874916 ~ 32924599 (-) False grm3
XM_036976060.1 mRNA downstream 182520 32874916 ~ 32924599 (-) False grm3
XR_005051510.1 mRNA downstream 262387 32839445 ~ 32844732 (-) True LOC118964459
XM_021599101.2 mRNA downstream 323140 32761197 ~ 32783979 (-) True LOC110521494
XM_021599091.2 mRNA downstream 323143 32761197 ~ 32783976 (-) False LOC110521494
XM_021599223.2 mRNA upstream 616352 33724849 ~ 33729966 (-) True lrrc4.2
XM_021599259.2 mRNA upstream 836337 33944834 ~ 33953935 (-) False rbm28
XM_021599268.2 mRNA upstream 836337 33944834 ~ 33953935 (-) True rbm28
LOC118966666 mRNA upstream 850831 33959328 ~ 33962096 (-) True LOC118966666
XM_021599303.2 mRNA upstream 874880 33983377 ~ 34002282 (-) True LOC110521614
TU37804 other downstream 1120969 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 1662170 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1974228 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 3826419 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 4402763 28703887 ~ 28704356 (-) True G29355
TU39914 other upstream 333871 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 759061 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 1169203 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 1233065 34341562 ~ 34381232 (-) True G36196
TU42180 other upstream 2165212 35273709 ~ 35278005 (-) True G37310

Expression Profile