RNA id: TU39882


Basic Information

Item Value
RNA id TU39882
length 3672
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G35272
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33401185 ~ 33481308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTTTTTTACAGCACAATTTGCATAATAATATCTTAACACATCCTGTGTACAACCACAAAACCAGAACGATAGATTCCCCATTTTTACACTGAGTGAAAAACAAGACCATTTTACAAGCATAATCTTTATACAGTCGGCATACAACTTCCGATAAATCTATACATATTATCTCCCTCTTTTTGAACATATCTGGAAGCAAAATATTGACAGACATGCAACATCCAGTGTGGTAACAGGAAGTCTCAAACAACTGAAATTAAGTAGATTTGTCCCCTCTGGTTGGCTGGGCATCTTTGACATAGTTTTACAGTCAGACACCCATGGGTTGACAACGCACGGTCAGATCACATAATCACCTTCTCACACACAccactagagacagacagacagacaggttttaagtgtttttgtatttttgttttacaCTCACATGCTCAAACCTCAGACAATACGAACAATCAATCTCTGTAGAAAATAAAACACTTTATATTTACATAGATCAGATGAGTACGCCACATTCACACCCCTCACAGATACACACGTTTGATTGGTTTCATGGTTACTAGGAACGGACTGAGCGACAATGGATATTGACAATCTAGCTGAGTGTAATCTGAGGAGAACATGAAAGGGGGGACAAACCTGGAGTTGGGCTTTGAAAATGACCTCATAATTCTTCTCAGACTGAACATCATGGATTTATACATACATGTGTTGGTGGTTATATCAACCATACAGTTTGATGGTGTCTCCTCAGATATGAAGCAATATGTACCTTAAATTGTCTGTGATTGTAGATTTAATTTGAGTTTTTCTTTTGCCATGTAAATTAAAAACAGTGTCATATGAACTCCTTCATACATCACAAACTCAAAATCATCTCAACATAAAGACACTAACTGGAACAGCCACTTCAACTTGCATGTTATGACACTTTACACGgaacaaggaaatcagtcaacaaTGTAATACTAAAGTGCACAAGCTTTATGTATATGATTGTATACAGGTAGTAAAAAATGTATCtatatttttttctatttttcttgaATAATatataaatcaaaataaatcaaaattCTCTTCATAAGATACATATTTTCAGACGCGATGTTCACTGATATTACATGTTAAGAAAATGCATTCAAACACAAAGTCTATGTTGCATAGAATTACTTCAACAGAACCAATGGGTTTGCTTACAAAATAAGGTTGGCACGACAATTACATTTTTGTAAAACTTTTTACCTTTCTTTAAAAtcatgtttattttttgttttatgaACATTCTGACATCTTGACTCATGAACATTCTGACATCTTGACTCAGTGTCTGCATTTCGAGCCTCTGATATGGACTTTATGTATTAGGAAATTGCATCTGTCACCCCTAGTTCCTCAGTGATATGCCTAGACACTAGCAGTCGGGTTGAGGGTAGTAGGTCTGTTGGGTCACCTGGTGATGTTGTTTACTATGATATATTCATAGTCTGGGTACAAATCTTTTTAGCTAATATTCCCCTCCCTGCCACTCCTGTCATTTACCAAAGACACAGAGTACAAGGAATGGAATGTAATAGCTGAACCGAGAAGTAAACCAGGCTACTATAGtgatgtatagtgtgtatgtatagtgtgtatCAGCATGTCCCGGCCATATGTGATGACTGGGCCATAGGTAATGACTTAGAGCATTGAGCAGAGACAGTGCCACAGGCTGGTTCACTGTGTTGTTGCATTACCTCCACTTACACTGACACCGACTGCACAGTGTACAATTTACAGTGTACTGTGTACAGCATGATGTTGGATGTTCTGTTAATAAACAAACCACACATTGATTTTTAAAAGAACAGTTCACACTTTCTTTTTGCGCTAATCTTTGAGAGGAAAATAGGCCATGTGTgacgacagacacacacacagcatacagaACCAGACTGTGATGGCACACACAGCATACAGAACCAGACTGTGATGGCACACACCGAGAGGACAGGTGTGTTTACCTGTTGCTTTGACATAGAACAGGTGAGCGGCCCAGTTTGGGGAGCAGAGCACTTCACCAGAGAGATGCTACACATCCCTCTGTCCGATTGCAGGACGGGCAAAGTGGCCAGCAATCCAGGTTTCTCTCTCAAACCAGAGCTATTGTTTAAGCCTCCAGTCACGTGTGTGAAAGACAACACAAAAACATCAAGTCAGATGAGTCCAGTAAAATCACATGATCTTCCTCAGTCAGTAACATTCAGGACATAATAGGGGATAGCTTGAAGGGGAAGGGACCTGACATCCCCTTTCTATCTGTTCTCTTCTCCCCACCTGTAAGAGGAGGGATATCCATGTGGAAGTTCTCCTCTAATGTCTCAGTTGTAAAATGAGTTCTACATTCACCATTTGAACTGCATTTTCCTATTTTTTCCAATGAATAACACCCAGTATAACTGCATAACGTCAGAGCTAAAGTGATTGGATTGTCTGTGCTCCTTCCATACATACCTTCTGTACAGAATACATTTAGTCTTTAGAATAAACTGCACATGAGGAGATTTATTGTTATAAACTCTATGTTCATAAATAACATTTCTCTGTACAGTGTGTCTTTGATATAATTAATATTCAGACATATATCTATCTACATCTGAATGTACATTAACACTTGTCCAGGTAAGGTCGAGTTGGAGTTTTATGGCGGTTGACAACTAACTGTAATAGGGAATTACCGCCACCTATTGGACGGAAGTGTTCAGATAATGTCAGTTACAGTTACTGCAATATCAACCATAGATTTTCAATGTACATACaccttgttttttttgtgtttttttttacattacatgAATAGTATCATACAACAAACATTCCATACTTCAAGCAGCTCAGGacaaaaaaacaaatacattgaTTTGCACCCCACCGACTGACTGAATGACAGACAGATTCACAGATCACAAAGATCTTAAAGTGGAGGCTATGATAAATCATAGACAACAGCATCAGATCCAGACAAAACAGAAAGGAGTAGTTCTGGCATGGTAATTACTCTGTGGTTTTGCTGCACAGTCCTGATTGACGTCAGGTTTTGCATCCGACATGTCCAGCAGAGAGCTGGGAGATAGTGAGATGTGTGTGTCCTCTTACAGCAGATAAGGGGacttcttcatttctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctggcagCCTCTGTCCAATCCGGGGTACAGTCTCTGAATATTTGGTCCAATCAGAAATCAGGATTGAGTCTCTGGCTGTTACTATCCAATAAAGAATCAGGGTACAGTCCATGTATGGCAGTGTGAGGGGATAGGcccccttccttccttccttccttctttccttcattcattcattcattcattcattcatacaaTAACACAAAGGAGATGAAGGGCACTCTGTAACGCAACTCATATTCCTTTTCCTCTTTTTCGTCCTCCTCTACGAGCAACCACTGACCAATACTATTCATTGACCTTCACTGACATCTGGTTGACCTCTCTGTGACCTCAAGTTGAACTCTCAGGACTGGTTGTGTGTGGAATTGACCAGCAGCTTGTGCCAGCTGACCACCCTCTTCCTCATGTCCACCTTGTCCAGCCAGATGTAGGCCTCTCCTATCAGGGTCTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39776 lncRNA downstream 237687 33237164 ~ 33239834 (-) True G35177
TU39649 lncRNA downstream 418259 33051299 ~ 33059262 (-) True G35052
TU39059 lncRNA downstream 523660 32953623 ~ 32953861 (-) True G34510
TU38966 lncRNA downstream 552931 32892856 ~ 32924590 (-) True grm3
TU39991 lncRNA upstream 71800 33553108 ~ 33553484 (-) True G35375
TU39992 lncRNA upstream 72732 33554040 ~ 33554344 (-) True G35376
TU39998 lncRNA upstream 81649 33562957 ~ 33563204 (-) True G35382
TU40055 lncRNA upstream 157356 33638664 ~ 33639265 (-) True G35435
TU40012 lncRNA upstream 165120 33646428 ~ 33649339 (-) True G35392
XM_036976052.1 mRNA downstream 552922 32874916 ~ 32924599 (-) False grm3
XM_036976060.1 mRNA downstream 552922 32874916 ~ 32924599 (-) False grm3
XR_005051510.1 mRNA downstream 632789 32839445 ~ 32844732 (-) True LOC118964459
XM_021599101.2 mRNA downstream 693542 32761197 ~ 32783979 (-) True LOC110521494
XM_021599091.2 mRNA downstream 693545 32761197 ~ 32783976 (-) False LOC110521494
XM_021599223.2 mRNA upstream 243541 33724849 ~ 33729966 (-) True lrrc4.2
XM_021599259.2 mRNA upstream 463526 33944834 ~ 33953935 (-) False rbm28
XM_021599268.2 mRNA upstream 463526 33944834 ~ 33953935 (-) True rbm28
LOC118966666 mRNA upstream 478020 33959328 ~ 33962096 (-) True LOC118966666
XM_021599303.2 mRNA upstream 502069 33983377 ~ 34002282 (-) True LOC110521614
TU39914 other downstream 25108 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 369024 33107119 ~ 33108497 (-) True G35075
TU37804 other downstream 1491371 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 2032572 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 2344630 31131893 ~ 31132891 (-) True LOC110520932
TU40263 other upstream 386250 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 796392 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 860254 34341562 ~ 34381232 (-) True G36196
TU42180 other upstream 1792401 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 1959610 35440918 ~ 35441328 (-) True G37907

Expression Profile