RNA id: TU40656


Basic Information

Item Value
RNA id TU40656
length 213
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G35964
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33938838 ~ 33939050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcattataggcacacttcaactacgacagaaaaaatgagaaaaaaaatccagaaaatcgcattgtaggattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40653 lncRNA downstream 2370 33936214 ~ 33936468 (-) True G35961
TU40652 lncRNA downstream 2677 33935889 ~ 33936161 (-) True G35960
TU40650 lncRNA downstream 5579 33933021 ~ 33933259 (-) True G35958
TU40221 lncRNA downstream 73147 33805191 ~ 33865691 (-) True G35586
TU40658 lncRNA upstream 3676 33942726 ~ 33942972 (-) True G35966
TU40661 lncRNA upstream 15451 33954501 ~ 33955468 (-) True G35968
TU40672 lncRNA upstream 29007 33968057 ~ 33968349 (-) True G35979
TU40662 lncRNA upstream 30140 33969190 ~ 33970767 (-) True G35969
TU40675 lncRNA upstream 34456 33973506 ~ 33973779 (-) True G35982
XM_021599223.2 mRNA downstream 208872 33724849 ~ 33729966 (-) True lrrc4.2
XM_036976052.1 mRNA downstream 1014239 32874916 ~ 32924599 (-) False grm3
XM_036976060.1 mRNA downstream 1014239 32874916 ~ 32924599 (-) False grm3
XR_005051510.1 mRNA downstream 1094106 32839445 ~ 32844732 (-) True LOC118964459
XM_021599101.2 mRNA downstream 1154859 32761197 ~ 32783979 (-) True LOC110521494
XM_021599259.2 mRNA upstream 5784 33944834 ~ 33953935 (-) False rbm28
XM_021599268.2 mRNA upstream 5784 33944834 ~ 33953935 (-) True rbm28
LOC118966666 mRNA upstream 20278 33959328 ~ 33962096 (-) True LOC118966666
XM_021599303.2 mRNA upstream 44327 33983377 ~ 34002282 (-) True LOC110521614
XM_036976155.1 mRNA upstream 70230 34009280 ~ 34018443 (-) True si:ch1073-390k14.1
TU40263 other downstream 70793 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 486425 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 830341 33107119 ~ 33108497 (-) True G35075
TU37804 other downstream 1952688 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 2493889 31426123 ~ 31444949 (-) True LOC110521048
TU40852 other upstream 338650 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 402512 34341562 ~ 34381232 (-) True G36196
TU42180 other upstream 1334659 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 1501868 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 1644242 35583292 ~ 35583608 (-) True G37976

Expression Profile