RNA id: TU40661


Basic Information

Item Value
RNA id TU40661
length 968
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G35968
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33954501 ~ 33955468 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcagttttttggcAATTTTTCACATGGACTAGCCTTCATTCCTtagaacaataatagactgatgagtttcagaagaaagtgctttgtttctggccattttgagcctgtaatcgaacccacaaatgctgatgctccagatactcaactagactaaagaatgccagttttattgcttctttaatcagaaaaacagttttcagctgtgctaacataattgcacgaaggttttctaatgatcaattagccttttaaaattataaacttcggttagctaacacaacgtgctattggaacactggagtgatggttgctgttgatgggcctctgtacgcctatgtagatattccataaaaatctgccgtttccagctacaatagtcatttacaacattaaccatgtctacattgtatttctgatcaatttgatgttattttaatggaacaaaaaaaaaacaaggacatttctaactgACCCCATACGTTTGAATGGTCATATATTTTATTAAAATGATGGTGAACCCACTGCAGTTCCCCCATGACCCCGCTTAGGTTCATGACCCTGACTTTGAATACCATTTCCCTAGCCCTTACCCCGTAGTTACTCAGGCCCCCCTCAACACCAAGATGTGACAGTTTGCACTGCACTTATCTACAAATGACATGTTTGAGCACTGTAGGTATAGTGGGGATTTGTCTACACTTTTACATATTCTCGAAGAACGTCCTACTACAGTAACTCTTAACCTGACCTACTTCCCAGTTCTATTATAATAAATTAGATACTTGCTTAGTATACTTTTGGCAGAATAAGTAATTGTTTCGCAATTGCACCAGAAATGTCATGTAATATATGATATAGCTTCTGCACTGTGAATGCATTGCGTAGGTTACGTGGTACTCTGAATACCTCAACAGCACCATTCCATGGTGACAATCTCTATTATGTTAAATTAATAGTATAGTGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40658 lncRNA downstream 11529 33942726 ~ 33942972 (-) True G35966
TU40656 lncRNA downstream 15451 33938838 ~ 33939050 (-) True G35964
TU40653 lncRNA downstream 18033 33936214 ~ 33936468 (-) True G35961
TU40652 lncRNA downstream 18340 33935889 ~ 33936161 (-) True G35960
TU40650 lncRNA downstream 21242 33933021 ~ 33933259 (-) True G35958
TU40672 lncRNA upstream 12589 33968057 ~ 33968349 (-) True G35979
TU40662 lncRNA upstream 13722 33969190 ~ 33970767 (-) True G35969
TU40675 lncRNA upstream 18038 33973506 ~ 33973779 (-) True G35982
TU40679 lncRNA upstream 18807 33974275 ~ 34068011 (-) True G35986
TU40681 lncRNA upstream 90844 34046312 ~ 34047304 (-) True G35988
XM_021599259.2 mRNA downstream 566 33944834 ~ 33953935 (-) False rbm28
XM_021599268.2 mRNA downstream 566 33944834 ~ 33953935 (-) True rbm28
XM_021599223.2 mRNA downstream 224535 33724849 ~ 33729966 (-) True lrrc4.2
XM_036976052.1 mRNA downstream 1029902 32874916 ~ 32924599 (-) False grm3
XM_036976060.1 mRNA downstream 1029902 32874916 ~ 32924599 (-) False grm3
LOC118966666 mRNA upstream 3860 33959328 ~ 33962096 (-) True LOC118966666
XM_021599303.2 mRNA upstream 27909 33983377 ~ 34002282 (-) True LOC110521614
XM_036976155.1 mRNA upstream 53812 34009280 ~ 34018443 (-) True si:ch1073-390k14.1
XM_021599348.2 mRNA upstream 69717 34025185 ~ 34040439 (-) True LOC110521650
XM_036976369.1 mRNA upstream 244887 34200355 ~ 34245388 (-) False iqsec3b
TU40263 other downstream 86456 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 502088 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 846004 33107119 ~ 33108497 (-) True G35075
TU37804 other downstream 1968351 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 2509552 31426123 ~ 31444949 (-) True LOC110521048
TU40852 other upstream 322232 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 386094 34341562 ~ 34381232 (-) True G36196
TU42180 other upstream 1318241 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 1485450 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 1627824 35583292 ~ 35583608 (-) True G37976

Expression Profile