RNA id: TU40662


Basic Information

Item Value
RNA id TU40662
length 1578
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G35969
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33969190 ~ 33970767 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttctttacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaagtgcatttatacagagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgtactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcacaaggcactgtaaggGGTTACTCTCATCACACTGCCACAGTAAATCAGTACATTCACCATCAGTATTTTACAAAATCGAAAATAGGTCAATTCTGCCAAATATCCTTTAAATACTAGGGGAGACTATTCTTACCAACACCCTGAGGGTGTTGTAAAAGTGGACATATCACTGTGACATGGGGGTGAAGGGATACTCTTACTTATGTCTGTTCCTGTTTCCTCTGTGAAGTCCTGTAACTCGTCTCCAATCCCTTCCACCATGATATCTCCCTCCAGTATGTCTCTCTGTTGAGTGGCTGAGAAGTCCAGAGCTAACAACTCTCTGTTTGTGGCCTGGGCTCTGGGTTGGTCCTGGTCCGAGTAAGTTGTAGACCCTAGCTGTGCATTCACTGGGGCTGGTGATGTAGGTCTAGTGAGTGGATTAAAGCCTTGGGTCTCTGTGTAGTCACTGATAGTTCCCTGAAACTcgtctttgttgtcctttttcTCAGTTTCCTCGGGTGCCAATGTGGAGTCTTTCAGCCCTGTTAACGAGTCCAGAGAGTCGGCCATTCTGGCTCCAGCGGTGGGGACTACAGGAGCCCAGGAGGGCCATACAGTGCTGTGTGAGGCCAGTACTGGGTCatcgatctgtctgtctgtatgtgggtgTGATGGTGCCTTTGTGGTGCCCTCTGGGGCCAAGGTAAAGGCttgaagatggaggagaggagcaagggagaggaggagagaggtccaCATCACAGCAGCCATGATGGAGTCCCTGTAGTGTAATATTCTCTTTGAAGTCACATGATTCCCAACGAACACTTCTTTCACCTCAACGCCACATACTTAAGAATAGGCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40672 lncRNA downstream 841 33968057 ~ 33968349 (-) True G35979
TU40661 lncRNA downstream 13722 33954501 ~ 33955468 (-) True G35968
TU40658 lncRNA downstream 26218 33942726 ~ 33942972 (-) True G35966
TU40656 lncRNA downstream 30140 33938838 ~ 33939050 (-) True G35964
TU40653 lncRNA downstream 32722 33936214 ~ 33936468 (-) True G35961
TU40675 lncRNA upstream 2739 33973506 ~ 33973779 (-) True G35982
TU40679 lncRNA upstream 3508 33974275 ~ 34068011 (-) True G35986
TU40681 lncRNA upstream 75545 34046312 ~ 34047304 (-) True G35988
TU40727 lncRNA upstream 113138 34083905 ~ 34084325 (-) True G36028
TU40729 lncRNA upstream 115321 34086088 ~ 34086337 (-) True G36030
LOC118966666 mRNA downstream 7094 33959328 ~ 33962096 (-) True LOC118966666
XM_021599259.2 mRNA downstream 15255 33944834 ~ 33953935 (-) False rbm28
XM_021599268.2 mRNA downstream 15255 33944834 ~ 33953935 (-) True rbm28
XM_021599223.2 mRNA downstream 239224 33724849 ~ 33729966 (-) True lrrc4.2
XM_036976060.1 mRNA downstream 1044591 32874916 ~ 32924599 (-) False grm3
XM_021599303.2 mRNA upstream 12610 33983377 ~ 34002282 (-) True LOC110521614
XM_036976155.1 mRNA upstream 38513 34009280 ~ 34018443 (-) True si:ch1073-390k14.1
XM_021599348.2 mRNA upstream 54418 34025185 ~ 34040439 (-) True LOC110521650
XM_036976369.1 mRNA upstream 229588 34200355 ~ 34245388 (-) False iqsec3b
XM_036976378.1 mRNA upstream 231712 34202479 ~ 34245388 (-) True iqsec3b
TU40263 other downstream 101145 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 516777 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 860693 33107119 ~ 33108497 (-) True G35075
TU37804 other downstream 1983040 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 2524241 31426123 ~ 31444949 (-) True LOC110521048
TU40852 other upstream 306933 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 370795 34341562 ~ 34381232 (-) True G36196
TU42180 other upstream 1302942 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 1470151 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 1612525 35583292 ~ 35583608 (-) True G37976

Expression Profile