RNA id: TU40679


Basic Information

Item Value
RNA id TU40679
length 4497
lncRNA type read_through
GC content 0.48
exon number 2
gene id G35986
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33974275 ~ 34068011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACCAGTGACAGGCATGGCACTGCATTGTGTGTAAAAAAACAGCTATATCATATACATTATATAAGACAACGCAAACACTTTACTAGAACCCTCTGTCATAAGggctacataacatgtcacaaaCAATCATACTGTGTCAATTTATCACAACTGATTTTACACCAACAGTCATGACTGTTTATGACATTGTTATGGCAGTGTTAAATAGCCCTTATAACAGAGGGTTTAAGTGAAGTTGAACCAGACCAATAACAGTGGTTATAGATGGTCATACAGTGAGGGGCATTATACATTTATGACAACGATAACTAAAGAAGCCTGAGGGGAAATCTGACTTTAATAATCCTCCAAACTTAGTGTAGtatgtttgtgtagtgtggcacAGCATAGAATTCAGCAGATTCCAAAATAAAACAGGATGTTCCAGCCCTGTACTGCACAGGGCTATGAATATGTTGTGCTAATACAGGGACTAGATCAGAAATGTAGGAGGTTCTCGGACTAAAGTTGAGAAACACTGATCCCTAATTAAGCATCACCAAGGGACTAAAACCTGCACACAGGACCGCTATTGGCAGATGCATGAAGATTTTCAGGCACACTCCTTGGATTACGATTGTCCACATTGCTGGTCTGCATATCAACTCAAAGAGCAGTTTGTGGTGGTAGCCCATAGAGTGGCCCCCGTGTTATAGCTCCCCcattgtaaataagaatttgttcttaactgatttgcctggttaaataaaaaatcgaATAAAAAAATGCTTGCACACGGAATCCAAAACCAAAAACCTGTGGCATTTGTCATTATTTTCTCCATTCAAATTGTAAACTTAAGTATACTCAAATGTGGTTCTGCaatgttgaaaatccaataaAAAGGTGTGGAGACAAGTTATTCAAGTTATTCTTATTTTAGAAGAAATAGGGAAATATTTAAGaaaagtgcaagggtgccaatatatttgtcctcaactgtgtgtttgtattactAGAAAGAATAATTTTTTCAAACATCATAAACCCAATTTGTTTATCATACCTCGTCTACGATGCATGACATACCAGTAGAACTCTTTTCCATGTACATTGTATTTACAATAAAACATttactgagtataccaaacattaggaacaccttcctaatattgagttacaccctccacttttgccctcagaaattccttaatttgtcagggcatggactctaaaaggtgttgaaagcgttccacagggtgATGGAAcgttcttgacacacacaggaaactgttgagcatgaaaaacccaacagGGTTagagttcttgacacaaactggtgcgcctggcacctactacagtACCCAgttcaaaggtacttaaatattttgccATTCACCCTCTGGCACatatccatgtctcaattttctcaaggcttaaaaatccttctttaacctgtctcctcccattcattaacactgattgaagtggatttaacaaatgacatcaataagggatcataactttaacttggattcacctggtcagtctgtcatggaaagagcaggtgtccttacgTTTAGTATACTCTGTATATTTTACACAGTCTTTAATGATATATACACCGTACGACACCGCGTTACACATTGTAGAGAAAGGGTTTGAAATATCCGAAGTTGAGCCGTTTTTCAATGAAATTAAAAACGTTGAGTGAGATCTTTGCTTTGGTATCGGGTTCCATTGCTGCATTTGACACTTGAACACTAGTATAACTCCTAGTTTATACTGCTGTTGTGACATAAACAGGTACGGTTGTATTGCTTGGTGGTAGGACACGCTTTATAAATTCTTTATAAACTGTTTATTAAAAAACAGCTATAATGTATGAGTTACACTTTatgttctctctcccccagtaGATGGCACTAAAGCATAACGTGATCTTGCATATTGGCATGGTTATCATCAACACTACactgacatttcatattcaaaGTTCTTCAAATCAGTTCTACTTTGGTTGTTTCAGTAAGTCCATTGTTCATTTAGCACATTTTGGAACTAACTGTACAGTTATATACAGCTTATAACTAATCAAACATAACTATCTATAAGTCTATTTTCTATGTGTAGAATCCCCATAAAACGGCAACTGATAGTTAGTTCTACCTCTGTACACTTCTGTTGTAGCAGTGAAAAAGCTGCTTGATCTGAATGCTAACATCACTCAAACACTAAGTGCAGCGTATCAGTTAAGTCCTCAGCTCTCACTAGAGGTCAATATATAATCTCTGTGCATTATACATGTCATATCCTTACGTCCTTGTGGCACATAGATGATGCATGGTTCAAACCCTGTAGCATCTGCCTACAGGTCAATAGTGTCACTGCACACGCTAAGAGCATCAATCTGTCGGCACACGTTGACGAATTCCGCTTGTACGGCCGTATCCCGTTCTAGCAACCTGCTTTCACTCAGGTCCTCTCTGCCCTCCAGCCGCCCCTCCCCCCGACTGTCCTGAGAGGCCGAGCTGAGGGTGCGGTAACGTCTGTGATAGGTAACGTGGGGGAGTGTCCTGGGCAGGCTGCTCTGGGAAGGCTGCcctctggtggtgtgggggtgtgaCCATGCCCCTCCTGTCCCTGAGCTGGAGAACAGACCCTGGGAAGACCCACTCAGGGACTCCTGGCACAGATAGCTGGAGTTACTACCTCTCCACCAGCACTCAGGCGGACAGCAGGGATCGCTGTGGCCTGGGAGAATGCATCCCGGCTGGGGAGGCCGTGTAGGAGACATATCCACATCTCCACAGGAAGAGGTCCGGTAGAGGGGACTGTCAGCTGAGCTGTTTCCAGGCCATGAGGCACTCTGGCTGTGGTGGGAGCCAGGGGAGTTCAAGGAGAGGCTGGAAGAGGCGTGGAACAGCCTGGAGGGGCTGAAAAGGCTGTGAGGGAACAGGGTCTCGCTGTACAGGGCCTGGTCTATGCTGCGGGACAGGTCAATGGGAGAGGGGGGGTGCAGGTCCACTGTGGAGTCAGTGTCCAGACATAGACTACCCTGGGAGGAGCCCTGGGACTCAACCCCAGCTTGAAGTCTCCCTGGTGGGCTTGGAGGATCAGGGAGGTTGGGGTGTCTGGAGGTTTTGGTCTGGCCagggtgggggttagggttaggatgcaGGTTCAGTCCATTTGAAGAGGGTTCCATTATTGTGTAGAGGGGGAGGGCTTCGGACTGGCGCTTCCTGATGACATCACACACCACCTGCTTCTCTTTCTGCCCAAGGGACCAGGGGTAGTgaggggggaggatgggagagaggggaagtgggTGGCTAGGCCCTCCTGCCGGTGAGGCACAGGGCAGCCGCGCCCAGGACCCCTGACAGGTGTTGGTGTTGAGTTTAGTCCGGGAGGAGGAGTTAGAGTTGGAGCAACAGAAGAGGAGGGGCTGAGTGCCGATGATTGACAGGGACAGACACACCCCCACCTCACAGAGCCTGCAGCCCAGGTGGTATGCCCACCAAGGCCAGGGCTGGAACCCTGCCCCAGCACTCACCCCTCCGAGCCCTAATGCATGTAACATCCCATACAGCTGAAGCCCCCCACACCCTAACAGGCACAGAGCCCCTCCCACTCCAGCCCTTGCTGCCCTTCTCCACTCCTCAGCCTCAGCGAATGGGCACCGGGACAGCCGCCCCACCAGAACTGGGGAACCTGTTACCTCTCCCTCGCTGTCACTCAGCCGTTGGATGTGTTTGGCGTCTTGTCGCACATGGCAGTAGAATAGGAGGAaggagcaggggaggaggaggcagaggaggatgaACATTCCCtgggggagcaggaggaggacagggaggctGGGGAAGACATGGAATAGAGCTATGGAGCCCAGGAAGGCCCCGAAGTGCATCAGGGAGAGGAAGAACAAGAGACAAGGCCTGtgcagggtggagagagggagggagagagagagggaaaaatgaAGGGAAAGGTGCATGCGAGagcggagggagagaaggaggaagcaGACGGAGAAGGCAGAGGTGAGGCAGGGGAAGGGTAgttcagagaggaggagaaagccCAGAGCAGGCAGGTGGTCCTGATGACTATAAGCATCATACAGGAGAGAGAATGCTCTAGTGCCTCCGGTGGCCAGGAGGAACAGGTGCAGCAGGGTAAAGTAGGGGCTTCCTGGGGGGCAGCGCAGGGGCAAACCTAACAGGCAGAGAACAGATATCAGACCTAATGCAGTGAACACAGATCCCAGACCGTAGATGTGGGCCTCCCAGGCAAAGCCCCAGGTGGCCAGAGCTGAGTTCCAATCAGAATACAGAGGTACaaagagaggaggggttagagaCAGAAAGGGGCGCTGGGATTGATTGGAGATGATGTCATCGGGGTAAAAGGGGCTCCAGGATTGATCAGTTGTGTTGCAGGGTGTGGTTCTGGTGTCAAGGCTGCAGTCGACGAGAGCCGACTCATTGGTGGCCGACTTTGGCCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40675 lncRNA downstream 496 33973506 ~ 33973779 (-) True G35982
TU40662 lncRNA downstream 3508 33969190 ~ 33970767 (-) True G35969
TU40672 lncRNA downstream 5926 33968057 ~ 33968349 (-) True G35979
TU40661 lncRNA downstream 18807 33954501 ~ 33955468 (-) True G35968
TU40658 lncRNA downstream 31303 33942726 ~ 33942972 (-) True G35966
TU40727 lncRNA upstream 15894 34083905 ~ 34084325 (-) True G36028
TU40729 lncRNA upstream 18077 34086088 ~ 34086337 (-) True G36030
TU40745 lncRNA upstream 46809 34114820 ~ 34115042 (-) True G36045
TU40750 lncRNA upstream 57246 34125257 ~ 34125468 (-) True G36050
TU40758 lncRNA upstream 69744 34137755 ~ 34139621 (-) True G36055
LOC118966666 mRNA downstream 12179 33959328 ~ 33962096 (-) True LOC118966666
XM_021599259.2 mRNA downstream 20340 33944834 ~ 33953935 (-) False rbm28
XM_021599268.2 mRNA downstream 20340 33944834 ~ 33953935 (-) True rbm28
XM_021599223.2 mRNA downstream 244309 33724849 ~ 33729966 (-) True lrrc4.2
XM_036976060.1 mRNA downstream 1049676 32874916 ~ 32924599 (-) False grm3
XM_036976369.1 mRNA upstream 132344 34200355 ~ 34245388 (-) False iqsec3b
XM_036976378.1 mRNA upstream 134468 34202479 ~ 34245388 (-) True iqsec3b
XR_005051566.1 mRNA upstream 228676 34296687 ~ 34302605 (-) True LOC118964492
XM_036976452.1 mRNA upstream 391417 34459428 ~ 34466711 (-) True LOC110521742
XM_021599612.2 mRNA upstream 405957 34473968 ~ 34490179 (-) False LOC110521764
TU40263 other downstream 106230 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 521862 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 865778 33107119 ~ 33108497 (-) True G35075
TU37804 other downstream 1988125 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 2529326 31426123 ~ 31444949 (-) True LOC110521048
TU40852 other upstream 209689 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 273551 34341562 ~ 34381232 (-) True G36196
TU42180 other upstream 1205698 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 1372907 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 1515281 35583292 ~ 35583608 (-) True G37976

Expression Profile