RNA id: TU40852


Basic Information

Item Value
RNA id TU40852
length 2716
RNA type TUCP
GC content 0.46
exon number 3
gene id G36141
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34277700 ~ 34362736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccccctcttcaaagggggtgacactctagacccaaactgctacagacctatatctatcctaccctgtctttctaaggtcttcgaaagccaagttaacaaacagattactggccatttcgaatcccaacataccttctccgctatgcaatctggtttcagagctggtcatgggtgcacctcagccacactcaaggttctaaacgacatcataaccgccatcgataagagacacaTACTGTGTTCCCTTCTCCTTGACAATGATGCTCTGCTCCAGTTTCTCTGCGGAGTTCATTTCCCAGGATTCCTTGGCCTGTGGAACAGGAAATACTTTAGTCAGCCAGCTAGCATATCACCTCTCAGAACACCAGACACATTTAGGGAACGTTCAGTAGGCAAAATGTGTGGAAATGCCATGAACAAAATGCAGAAGGGATGTTTCTGGACAGGACCGTCTAGTTTGAAATGGCTAAAGGGTCATACCTTCTCGAAGGTGGTCAGTTTGAGTTTGTACTGCAGAGTGGCTTCACCAGGAATATTGTACTTGCTGTTGCCTGTGTTTCCATAGCcataccttcacacacacacacacacacacacacacacttagatatACAGAGCACagggggctgctgaggggagaacagctcataatggcgcaaatggaatggcaaacacatggaaaccatgtgtttaataccattccgctccagtcattaacatgagcccgttctccccaattaaggtgccaccaacctcctgtgatatagAGTGCAGACAACTCGGCTAATATGCCCAGAGAACACACAATTACACATTTCTCAAAACAACATAGTATGTACACTAGGTTTGTAGTGGGTATTACTTGGGTTTGATGATGAAGAGGgactcctctccctgctccatAGCCATCAGGGCTTTTTCCACTCCGCTTGGCAGACCCaggctctctccatctcccaacTCAAACTTCAGCTCCCTCTTGTCAAACACCTTGCCCTCACAGCTGCCCTCCAAACACACTGCaggggaaagagaaagatggGTGTGTGAGAGCTGGTAGGTCTTAGTTTGGTTTGGCGTATCCCTGTTCCTTATTGATGATACGTTTGTGTGCGCGCGCTCATACCTTCTACGGCAGCTCCTTCATTAGGCTTGGTGTATCCCTCTCCCTTAGTGATGATGCGACGGATgattcctccatcctctccctctgtgATGTCCTCCCCCCGAAACTCAAACAACTCCAcctaacacacacaaaacattcaATTTGAGCACTCTTACAAAGTCACACGTCAATGTTGGCACAGAATGTGTATCTCAAAAACACAACTTCTAAATCCCTGACAGACAGAGGGTTACCTGGAAGACAAGTGTAGCGTTGGGGGGTATCTTCGGGGGGCTGCCAGCAGTGCCGTAGGCATACTCTGGTTTACAGATCAGCTGGCTGATCTCTCCTACTTTCATAGTAGCCACTCCCAGGTCCCACGCCttgatgacctggcctacacacacacacacacagttatggtAGCCACATCAAGGTCCAATACCTTGATCGCCTGGCCtacactaacagacacacaccTTTGCCCAGCTCAAAGGAAAACTTCTCTCCTCGTTCACGACTGGAGTCAAATGGGGTTCCATCCAGCAGGGTGCCAACATAGTGAACAAACACCTTGTCCCCAGTCATAGGCAGCTCTGTCCCTGTGCCTTCCTGCTTCACCAACTAGAGATGGAGGTGAGGTAGAGACTGAAGATTAGTTGTGCTGTAGCAATGTATGTGGTttagtacactgaacaaaaattcAACCTAACATGTaaagtttcatgagctgaaataaaagatcccagaaatggtTCAATAcagacaaaaagcttatttttctctaATTTGTTTTACATTCCTGTTCTTGCACCTTTATCCTTTGTCAAGAGAATCCAtctacctaacaggtgtggcatatcaagaagctgaataaacagtatgatcattacacaggtgcaccttgtgccgggggcaataaaaggccactaaaatgtgcagttgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatatcagctGTAAAGGGCAGCTTTAGCTGAGGAGGAGACAGTGCTTTCTGTGTCCAAAATCCAGCAATCTgtatgcttataagaaatcccgctatgccctcagacgaaccatcaaacaagaaaagcgtcaatacaggattaagattgactactacaccggctctgacgctcgtcggatttGGCAGGGcatgaaaactattatggactacaaagggaaaccaagacgcgagctgtccagtgatgtgagcctaccagacgagctaaatgccttttatgctcacttcgaggcaagcaacattgaagcatgcatgagagcaccagctgttctagatgactgtttgataatgctctcggtagccgatgtgagcaagacctttaaaaacaggtcaacattcacaaagccgcggggccagacagattaccagggcgtgtactaaaagcatgtgcggaccaactggcaagtgtcttcactgacattttcaacctttccttgaccgagtctgtaatacctatatgtttcaagcagaccaccatagtccat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40758 lncRNA downstream 138079 34137755 ~ 34139621 (-) True G36055
TU40750 lncRNA downstream 152232 34125257 ~ 34125468 (-) True G36050
TU40745 lncRNA downstream 162658 34114820 ~ 34115042 (-) True G36045
TU40729 lncRNA downstream 191363 34086088 ~ 34086337 (-) True G36030
TU40727 lncRNA downstream 193375 34083905 ~ 34084325 (-) True G36028
TU40922 lncRNA upstream 5414 34368150 ~ 34451770 (-) True G36209
TU41202 lncRNA upstream 107090 34469826 ~ 34471046 (-) True G36438
TU41236 lncRNA upstream 158570 34521306 ~ 34521569 (-) True G36471
TU41264 lncRNA upstream 189942 34552678 ~ 34554757 (-) True G36491
TU41366 lncRNA upstream 336063 34698799 ~ 34703817 (-) True G36579
XM_036976369.1 mRNA downstream 32312 34200355 ~ 34245388 (-) False iqsec3b
XM_036976378.1 mRNA downstream 32312 34202479 ~ 34245388 (-) True iqsec3b
XM_021599348.2 mRNA downstream 237261 34025185 ~ 34040439 (-) True LOC110521650
XM_036976155.1 mRNA downstream 259257 34009280 ~ 34018443 (-) True si:ch1073-390k14.1
XM_021599303.2 mRNA downstream 275418 33983377 ~ 34002282 (-) True LOC110521614
XM_036976452.1 mRNA upstream 96692 34459428 ~ 34466711 (-) True LOC110521742
XM_021599612.2 mRNA upstream 111232 34473968 ~ 34490179 (-) False LOC110521764
XM_021599629.2 mRNA upstream 111232 34473968 ~ 34490179 (-) False LOC110521764
XM_021599638.2 mRNA upstream 111232 34473968 ~ 34490179 (-) False LOC110521764
XM_021599669.2 mRNA upstream 111232 34473968 ~ 34490179 (-) False LOC110521764
TU40263 other downstream 409655 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 825287 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 1169203 33107119 ~ 33108497 (-) True G35075
TU37804 other downstream 2291550 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 2832751 31426123 ~ 31444949 (-) True LOC110521048
TU42180 other upstream 910973 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 1078182 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 1220556 35583292 ~ 35583608 (-) True G37976
TU43028 other upstream 1358704 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 2007358 36370094 ~ 36409019 (-) True LOC110522187

Expression Profile