RNA id: TCONS_00026971


Basic Information

Item Value
RNA id TCONS_00026971
length 576
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id XLOC_013439
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 24741499 ~ 24746401 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcattttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtggtaagtcatcgttttattaatttttttattttattgcaacactAAGTTGTCCATTCTGTGGCCAATATGATATAAAGGGCCTAAAATGGGACTGACGTGatcattgttttgatttctagataagtactcatggggctacacatgcagctgaagttagcttcattgagtaggacatttctttcagtatactcttaaagagattcacccaaaaatgaaaattctgtcattattgactcatccttcacttgttccaaatatgtCTGACTTGCttacttcagttaaacacaaaaaaattatattttaaagaaagatgaaaacctg

Function

GO:

id name namespace
GO:0044464 obsolete cell part cellular_component
GO:0005623 obsolete cell cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027340 lncRNA downstream 182906 24497624 ~ 24561884 (-) False XLOC_013437
TCONS_00027339 lncRNA downstream 187365 24497624 ~ 24557425 (-) False XLOC_013437
TCONS_00027338 lncRNA downstream 187365 24497624 ~ 24557425 (-) False XLOC_013437
TCONS_00027337 lncRNA downstream 187365 24497624 ~ 24557425 (-) False XLOC_013437
TCONS_00027336 lncRNA downstream 187386 24497624 ~ 24557404 (-) False XLOC_013437
TCONS_00026537 lncRNA upstream 243935 24990268 ~ 24996634 (-) False XLOC_013441
TCONS_00026535 lncRNA upstream 243935 24990268 ~ 24996735 (-) False XLOC_013441
TCONS_00027342 lncRNA upstream 243935 24990268 ~ 24997070 (-) False XLOC_013441
TCONS_00027343 lncRNA upstream 434206 25180539 ~ 25189610 (-) False XLOC_013445
TCONS_00027344 lncRNA upstream 434206 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026521 mRNA downstream 869420 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA downstream 869571 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA downstream 869861 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026514 mRNA downstream 1991153 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 1991153 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026532 mRNA upstream 187140 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 192359 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026534 mRNA upstream 234551 24980884 ~ 24988645 (-) True XLOC_013440
TCONS_00026538 mRNA upstream 249686 24996019 ~ 24996634 (-) True XLOC_013441
TCONS_00026539 mRNA upstream 281162 25027495 ~ 25051846 (-) True XLOC_013442
TCONS_00026529 other downstream 184393 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 267907 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026525 other downstream 268676 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other downstream 428491 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026523 other downstream 721777 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026536 other upstream 243935 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026541 other upstream 412328 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026548 other upstream 769560 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026554 other upstream 1008505 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 1108677 25855010 ~ 25905598 (-) True XLOC_013452

Expression Profile

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