RNA id: TU41264


Basic Information

Item Value
RNA id TU41264
length 1533
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G36491
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34552678 ~ 34554757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctgttagtgcgcatttttcctttgccatgataatccatccacctgacaggtgtggcatatcaagaggagtatttttgtctgtaataaacTCATTCTGTTTGGCTGGGCCTGGGTaccccatggctgcacccctgcccagtcatgtgaaatccatagattcaggcctaatgaatttatttcaattgactaatttccttatatgaactgtaactcattaaaatctttcaaaatgttgcatgttgcgtttatatttgtgttcagtatatgtGTGAGTGCATGCGTGCTTGCATGTGAGTGTTTGCATTACCTGTGAAGAAGACATAGGGAGATTCTGTTCCTTCAAACAGTCCTCTGGTCTTTGGGTCaaacctcaaccacaaccctataGCCAGCACTCCTGTACCTGCAAGCTAgaagaagaagttgaAGATAAACATGAGGTACTTCACACACCTGATCCTTCCAAACACTTCCATGTTGCTAACGTGATCTCTGTGTGTAACAGAGCAATAACTAACTCATTAACACTTCTCTCCTATTTCCCTAGACAGTATCGCAGAGCGTGACAGGGATAAAGcaagaggagagatgaagagagcatAGAGTGATACAAAGAGAAAGCAGTTGGGagtaactgtcacgccctggagTCACCTGATCAGAAAGGTAGAGGAGGTGGGCTGGGGGAGGGAGGATAGCGCAGATAACCTGAGTTCTACTCTGTGAATGATTGAATTGGTTTACTCTGTGAATGATTGCGTTGGTCTATTCTGTAAGTGATTGAGTTAATTTGTTTAATCTAATCATGCTGCTCGCACTACACAACTACACTACTGCTTATACACCCTCACCAGCTGCAGaatctaacacacacacccaaccataGATACTGTAGCTACCTACAATCATGGACACATGTTCTGAATCATGCAACAAGGGGAGCTCTGTTCTTTCATCTGCATTGGGGCTATACGCGTCACACGTCGTCACACACCCCACCAAGACACAACACAAaatacaacacacaaacacacaatatcacacacacacatacaaacactgaGTTATTGAAATGCTGTGCACACTGGGTCACTCGGCCACCAGGGATTATTtggccagtgtgtgtttgtgtgtgagattaTTTCACCGTTCACCAACAAGAGGCCACTTCTTAGTCCAGTCATGGCCAGCTAAATCACTGTTCCACTTTCCCCAAGCAGATACTGACAACCCCCctcagacagatacacacatgcacacacacaaacacacacactaactgaaAACGGTAAATTATATGTCATTTTTTGTATTACCAACAGTAAAATACTCTGAAatggtttaaataatgtaaatGATGGTGCATTGTGGGCAAAGTTTGTGGGCAGGGAAAGAATTGCTGTATTTCGAATGGTACTGTAATTACACCCCACATAATACAGTACCGTATCATATTTTTTGGACTTCCCAAAACCTTTTTGCCACAAGTGGGAGCATGGTATTGTTGTATCTGGCTTATTAACACTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41236 lncRNA downstream 31109 34521306 ~ 34521569 (-) True G36471
TU41202 lncRNA downstream 81632 34469826 ~ 34471046 (-) True G36438
TU40922 lncRNA downstream 100908 34368150 ~ 34451770 (-) True G36209
TU40914 lncRNA downstream 105075 34349113 ~ 34447603 (-) True G36202
TU40758 lncRNA downstream 413057 34137755 ~ 34139621 (-) True G36055
TU41366 lncRNA upstream 144042 34698799 ~ 34703817 (-) True G36579
TU41372 lncRNA upstream 151143 34705900 ~ 34706163 (-) True G36585
TU41377 lncRNA upstream 158448 34713205 ~ 34808214 (-) False G36588
TU41376 lncRNA upstream 246845 34801602 ~ 34808214 (-) True G36588
TU41470 lncRNA upstream 263572 34818329 ~ 34819021 (-) True G36674
XM_036976498.1 mRNA downstream 62499 34473968 ~ 34490179 (-) False LOC110521764
XM_036986954.1 mRNA upstream 92628 34647385 ~ 34653826 (-) False cpt1
XM_036984421.1 mRNA upstream 92628 34647385 ~ 34658904 (-) False cpt1
XM_036985287.1 mRNA upstream 92628 34647385 ~ 34658904 (-) False cpt1
XM_036985693.1 mRNA upstream 92628 34647385 ~ 34658904 (-) False cpt1
XM_036986625.1 mRNA upstream 92628 34647385 ~ 34658904 (-) False cpt1
TU40907 other downstream 171446 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 189942 34277700 ~ 34362736 (-) True G36141
TU40263 other downstream 684633 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 1100265 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 1444181 33107119 ~ 33108497 (-) True G35075
TU42180 other upstream 718952 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 886161 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 1028535 35583292 ~ 35583608 (-) True G37976
TU43028 other upstream 1166683 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 1815337 36370094 ~ 36409019 (-) True LOC110522187

Expression Profile