RNA id: TU41376


Basic Information

Item Value
RNA id TU41376
length 6583
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G36588
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34713205 ~ 34808214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGACAAGGCAGtttttatgtgtttttattttacattttgacAAGTCCCCCTAATGATACAAGATAGATTGTGTTTTTGTCACATACTGATGCTCTAGTTATACAGTGAATAATATTGTTTATGGATTAAAAAAAGGAGATGAACTGTTAACTGGATGTCTGAGCTGCTATACATGACTAGGGGATACTTGGTGGTTGGTTGGTGTACTTTAGCTATCAGGGAAGTTCAAAGGACTTCAATTAAGCTGTTATAAGACAGTGAAAATACACGAAACAAACTGGTACAGTTAAGAGATGGCACACATCTGGAGCTCAAAGCCAGAGGTGTGGACTTGAGTCACATGACTTTGACTCAATTCACAAATTTGATGACTTGAGACTCAGCctgatagaaaataaaataccTTGATTATCTGGCCAGGTTTTGGAACGATTTGACTCCGTGGAGAGCCAGAGACAGTATCGCACttgcaaaaaacaacaacatattggCTAGTGAAACGCACACATGGACCTATGATTGGACCAGCAAAGTCACCCAACACTGGGTGAGTTAGCGTAGTGAGAAGGTTTTAGGGAGTTTAAACTGAAtgggcaaaatatatatatatattttttatacatatTTTAATAGGCTATCTATAGCCTACCATTTGTATTGTATATTTATACAATTGCTTATTCGATCTGGTCATTAACATAGGCCTACGGCATTGAACAATTATTTGTAAAACATATCATCTGTGCTTCAGAACCAAAAAGCTGCGGGTCTTGACTGTTGACCAATGTCCAGTCATCAGCATTGGTGCGCAAAGGCGGTCGCACACATCCAAATAGTGACCAAAAAAGCACTTGTTTAATTTTCTCCGATTTTGCCTGGTAACAACAGAGTAGCCTGCCTACATTAATATGATCCATATAAAGTACCGTTTAGCAATGGTGATTTCATTTATCATTTTCAAATTTCAGATATGGCTTAGTTTGGGTGGGTTATAATTATACAGCTCAGTGGTAACATCACACTACCTTCAATACTTATGGGATGAAGATGTAACATATTCTGGCGAATTAATTACTTATTTGTGAGGAAGAAAAAGGCTAGACAGATCATGCTTTCCATCCGATCCGGCAGCCTCTGCTGCATACAGGTATGCCATTTGATCCTGCTAGCTCTGGACTCCAGCGAAGTGACAATGACCACGTTTACATGCGCACAGTAGTCCGGATAGGAGCTCATATCCCGCTTAAAATCTTATTCGGCTAAATTGTTTACATGCACCTCTGATATCCCGCTCACGAGTAACCGTGAATAAACAGAATATTCCCAATTTAAATTAATATGGGCTAAATGGGATAGTAACTGAAatatggacactgactgtaggcctaTTACCTCTCACACGTAGCGGAGTgagtataatttgtggaacgttccaactttgtaaataacaaggttgccaacaaacaacgcattCAAAGTTCTATAGTGGCAGAATAAGATACCGGGTAGGTTGTTGGCAGTTTGGTTAAATTTTTCACTCACCACATTTATTCAGAAGAATGTATATCCTTGATCTGGTATCCTATggacaaacattaagaataaTCTATGTGGTGAGTTGATGCCTATTTAGCAGCTAGATAGCTAGGTGAATTGATCGTGCaactttgtatgcgttgtttgttggcatCCTTGTACTTCAcgaagtttttggaacagattcaTGTTGGAAgtggaacgttccacaaattatacccacaaCATATAGCATAATAAAATATTAACTCCTTCAGAATTATGCATTTATTGCAGTAAAATTATACAACAAATGTTAATTTCGTCATGGGAACAGGAATGgagaaatattatttatttattttagcatCTCGAGAAAATACAAATGCCAGGGTAATGTGTTATCTTTGACACTGTAATGCAAGCAGACATATGCACCCAAGCCAAACTGAAGTCTTATCAGAAATGTGTTTAATTGTTCTCAGCTTTTCTTTTCCTTAAAACCAGTCAAACTGATTACATTTTGCACAGGACCAATCTTTCCACTGTTTTGGAGTTGTTGCATTTTCTTTCAGGTACCTAAACAAAACAGACAACTTTACCGGTATTTACTAGATTACTAATGCATTCATTCTATCAATGTaagacattattctggtgagcactactttatttagtcttctgGGGCAACAAtttatgacagaagagaagctgcatgtaggCCTATCTAACCATAGTTGACAAACAATTGGCCTACCAAATGTAGTAAAttatatggcctaccaaatgtcagaagTTATAAGCAGAAAGTTGTCTAAATTAGTGGTGAATGTAGCTAGTCGGCTATACGGTCCAGTATGGAGTAGCGGCAAAATACATTATTATGGAATTATGGTGGATTGAATTTGACAGGTAGCCCACCCTTTGAAGTGATTTGACAATCTGACGAAAACGTCATCGTAGAACCCCATGGTCTGCACAACACAACATATGCGCAACTGAGCCTGCGCAGACAGCGAAAAATAACAGTTAAGGGTATAAGTTGTTTACATCCCGTCTAAAATCAGCATATCCCAGACATTTTATCTGGGTTTCTCATAACCGGGACAAAAGCTTTTTTGGGTTATTGTAATTGGGATATGATGTTTATATGCACCATCTCAAAAACAGAATACTTGAGTATCCTGAATAATAACGggatattggtgtgcatgtaaacgtGGTCACTGTGACATGATATCCCTAGTTGATATCGACAGCTAACATGAATGACTTTCAGCTCAAAATGCAGGTGTAAAAGGGTTCTGACTTATGTTTATTTGTGTATCTTTCGTTTTGAAAATGCATCACCGTTTTTTGGCCGTAATGATAGGCTAAATTTGAGCAGCGATTCTGCGCACCTTTGCGTGGGGGGGGGGTCTCGAACTTTGAACCATTCCTTTTTGGGGGTTGCGGGTCAAACAGTTAGAAAACCACTGAGCTGGCAAACAGATTGCTGATTTGCTGAACAAGCTATAGGATCGTGTGCAGCGCAAACGTCAAATTGTAGGGACAGAGGATTGTCATAAATTAATATACATCTCATTTTTTTTTGCTGAAGCTCATCAGCAATGGGGCATCAAGCAACAATTTctagcataggcctactggtGTTTTGGTATGTCAAAATTGCTTGAAATGTATAATTTACTTATAAGGCTTGCATTTGGAATTTGGTAAAATAAATTATTACATAATCAAAATGTGATGTtgacaaaataatgaaaagggctgtctggtagcctacattttttttaaacaagcctttgcctgtatattttttatttttttacttgatTTGAGACACAAAAAAAACTTGCGACTCGACTCGCTCTTAGAATGCAAGACTAGGACTTGACTCAAGACTCAacccgttctacttgggactcGATTTGAACCTTGTGACTTGAGATTTGCAGTGACTCGAATAatagtgacttggtcccacctctagTTCCCGTGTGAAAGCAGAGTTTGAAAGCTATTTTAATTGGTTAATCTTTACTACTCTGCTCTATCAGCGGATTGGCCAGCACTTGAGTGGGTGTGGCATTGGATATCAGCAAGGTGACACTTTACGTGTGTCCCCTAATGACAATGTCACAGATTTGCCTAAAAGCGGTGCTGCTGAAGCCTGTCTGTGGGGTGAATGTCTGAGTTAGCAAGAACTTAGTGGTTCACAAAACATAGTGGTTTGATGTAGAGACAGTGACGTGTATGGAAACGCAACACGATCAAATTAAAACAAATGATAAAAGGAAATGTACAatgttttctctctttccatTGTGGTTTTCATGGTTCTTTTTTGAATAGGTCTCCTTTTATTTGACATATTCCATTTCAATAACATCCTTAACGTAAAGGACACAGCACTATCTTGTTGACTCTCTATAGTATTTACAGGATCTAACCGACAGCAATACACATTTAGATtataccctctctcccctcctactGACACCACTCTCACAAATAATAAACTGGTCACCATGGAGGTCCCATGACTCCTCATCACCAGCGGATCAACAATGCTCTCCTCTACAAGATCTTCTTCTTGCTGTTTGATACTTGTTGAAGAATAAAAGCAGTAGAAGAAGTAGACAAGCATCCCTCGCCTTCTACACTCAACCTGATATTGGGGATTGCAGTATGACACCTGTTATTTCAATTCATTCTGTGTTGGCCACCTCTCTACTCCCTTCATCTGTTTAGATGTtatactgtaggctacagtatgcTATGTGAACTGGAAAAGACAACTGTAGAAAGTAAAATGTCCTATCATAAGTACGCAAAcgatgtactgtatattacctatGATAAGAGTGAAATCAAGGAGTATATGTGGAAAGGTCAACTTCTCAGGACATGTATCAGGCAGAATATGAGCCATTAGACATTGTAAAGTCAACTTCTAAAACTGTTGGACGGACCAAAGCAAGCCTATTATATCCAAGAAACTACCAGTCTTTCAATGGTGGCACTTCAATATCAAATCTTTTTCTAACTTAAAGGGGAACTCCTCTCAAAAACGATCTTTTTGTATTTTTCCATAAATGATTAGCATTTTGCATCATCATCATGGTGGCCGGTGACATCTTGAAAGTCTAATATCTTGAAAACTTAAATGCTTAAACTGTCTATCCTCATTTTGACTTGATCCACCTTAAAGAGAAGGTAGAAGGACACAGAAGGCACCACTACTTTCTTAGTCAGCATTATCGATGTCATGACTTTACTTTCCTTGTCGCCTTATGGACAGTCAACCAAGGCCAATCTGGCCTTATTCTCAGTGGACTCAACTCAAACAGGGACGGACACCCACCTGTACAACAGTGCTTCCTGTGAGGGAGTAGTGTTGAACAGTCAGAACCGTGGGATTATGGCTTCTCCTGAAGAGGACCTTCAACTGTCCTCAACCTGATATTCAGACTGATTATCTCTGTACATGTACATTAGGACACTTCACAGTTGGACCAGATGGAAAGGAATATAACATTGGATTGTTTCTGTAATACTGTATTTGCATCATTAGAAGTCCAGAAGCTGAatgattctctctctttttttatctttttttaaaaatctttctCTGTTCACAAAGCACTGACAGTTATCGCTGTTTCCATAGCAACCTCTTCCTGCCACTGCTGTGTTTGGAGATTTGATCAGAGGAGCTGTTGTCCAATGACAGATGACTACTGAGACAGTTATGGACCATGGTGGACGGGGCTTACTATCAGGTCAACATCATCAACATAAGTCAGAACCCTTTCAATGTCAAAATGACCAATATGATGAAGAGCCTCCATTGCAAAACTGAGGCTTCATTCCATTTTAGcccctagtcccttcccctagctcCTGCTCAGTGTTCACACCCACAGATCTGAAAGGATCTGGATAGGTGTAATAAATATGATGGCAACTCCATTTAGCTTAATTGAAGGGCTAACTGTGGCCATCACCACGTCGCTTACACCTGCTCGGTCCTTTGAGATCTGACGCCAGTACATTTTCAAACTATGAATAAAAAAATGGTGGACTTCAAAGCTGGGGAAGGAACTAGAGAAGAGAACTGGAACCAGGCATAAGCCACATAACACAACCAGTGAAAGGATAAGCTCTCTGAAATAGGTCCAAGTCCCACCAATTGTTCCTGACCCACCATTTGGTAAATACTGGTCTAAAacatcatccctctcttcctttctatttctttatttttccttTCGTCACTTCCTCTTGTTTGATTATTGGTTGTGGATGCTACTTTCATAGTTTGTATGTGAGTCATCTGTATTTGTCTACTGCCTATAcataggtgttcctaatgtgtaTATTTACAGATCACACTTTCTTGTACACGATACAGGTGTTAGCTCGGACCAATCACATCAatgtactctctctcttcttcgaTCTTtgaacaaaaacatatttacacCAAACCTCACCTGACCAAATAATATGCTTCATGTCCTCTTGATTTTTGCGCCATTTGTGTGTCCtaattttgtgtgtgtgattgtgtgtgcatTACCCTCCTAGCCATGCATTGGAACATGTGAAATAGCAGTAGTAGGAATttcattgttgttattgttttttaAACCGAGGAGGATACATAATATCTAAAATACGGTACCAAGACTTATTCCTAGAACCGTATCATAGAAAAAGAAACAGGCAATCCATCTAGAAGAtggaaaataaatgtataaaCAAATGAATCATTAAATAAgtcaataaattaataaaacacgTCGCATACTGTAGAACGGAAATTAACATTCCAGTTTTAGAGGGATACTGTATATATGGGGTATTTTACAATGGAAAGAAGAGCCACCAGTACCCCCTGGTGGTGTGATTGATGAACCTACACAAGCAGCAGCAGGAAGAAGCGGAGATGGTTGTCATGGCAACACTTCCTACTTCCTGCCTGCTTTACTCCAGGTAGATGTCTTCGGTGGGGCAAGCGTATTCCAGGTGCTCCTGGTAATACTCCTGGAAAGCCCGTc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41372 lncRNA downstream 95439 34705900 ~ 34706163 (-) True G36585
TU41366 lncRNA downstream 97785 34698799 ~ 34703817 (-) True G36579
TU41264 lncRNA downstream 246845 34552678 ~ 34554757 (-) True G36491
TU41236 lncRNA downstream 280033 34521306 ~ 34521569 (-) True G36471
TU41202 lncRNA downstream 330556 34469826 ~ 34471046 (-) True G36438
TU41470 lncRNA upstream 10115 34818329 ~ 34819021 (-) True G36674
TU41476 lncRNA upstream 15025 34823239 ~ 34823474 (-) True G36680
TU41499 lncRNA upstream 31188 34839402 ~ 34839649 (-) True G36701
TU41905 lncRNA upstream 73587 34881801 ~ 34882129 (-) True G37053
TU41913 lncRNA upstream 88919 34897133 ~ 34897464 (-) True G37061
NM_001124600.1 mRNA downstream 110643 34686750 ~ 34690959 (-) True zp2.3
XM_036976547.1 mRNA downstream 137131 34659087 ~ 34664471 (-) True LOC110521923
XM_036984838.1 mRNA downstream 141449 34647385 ~ 34660153 (-) False cpt1
XM_036986122.1 mRNA downstream 141450 34647385 ~ 34660152 (-) False cpt1
XR_005041872.1 mRNA upstream 48247 34856461 ~ 34868295 (-) True LOC118947385
XM_021599989.2 mRNA upstream 473071 35281285 ~ 35285817 (-) True LOC110521966
XM_036989454.1 mRNA upstream 478327 35286541 ~ 35287452 (-) True odf3b
XM_036973693.1 mRNA upstream 505739 35313953 ~ 35315936 (-) False LOC110520384
XM_036973075.1 mRNA upstream 505739 35313953 ~ 35316025 (-) False LOC110520384
TU40907 other downstream 420370 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 438866 34277700 ~ 34362736 (-) True G36141
TU40263 other downstream 933557 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 1349189 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 1693105 33107119 ~ 33108497 (-) True G35075
TU42180 other upstream 465495 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 632704 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 775078 35583292 ~ 35583608 (-) True G37976
TU43028 other upstream 913226 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 1561880 36370094 ~ 36409019 (-) True LOC110522187

Expression Profile