RNA id: TCONS_00026534


Basic Information

Item Value
RNA id TCONS_00026534
length 671
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_013440
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 24933473 ~ 24989580 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAAAAGCAAGAAGACGAAGGCTCGACTCAAAGCAATGCTTCCAGCAACTCAGCATCCGAGGAATCCAACCGCTCTGGGTCGGAGTCTGGAAGTCAGTCGGAGAGCGAGCAGGGCAGTGAAAAAGCACAATCCCGGCATTCTGAATCCAACAGCACGTCTGATTCTGAGAGCCACTCTGAGTCAGGCAGCGAATCCAATGGGTCCAAATCTCATCAGAGCTCAGCGCAGGTCAAAGACAAACCTGTCAGGAAGAAAGACAACCTGGCGGATGTGAAGAAGGTACACAAAAAGATGTGGGAAGAACATCCTGATGTTTATGGTGTGAGAAGATCCAGTCGCAGTAGACAAGAGCCTGCACGCCTTAATATTGGAGCTGAGGGCAGCAGTGATTCAGAGGGAGAAAGTTCCAAACGAAAAAGCTCTCGGCAGAAAAAGAAAGAGTaagtgtaatggaagtctacAAACAGGTCTCTCGTCCAACTTTTTCCATGTGTATGTATAGATTTGTTGTGCTTATGATTTCCTTTTAGTCTTCATGAATGTCAGTATTTATAAAACATACATTTGTATTCATCATTTATGTTTTTGCATGTGTCAAATGTCTTTGCTgtttttatcattgttattttgAACATTAAATACGGAAAACATCCAGTAAATGCCATTCAG

Function

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0040011 locomotion biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050419-256 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Acts upstream of or within chordate embryonic development and locomotion. Predicted to be located in nucleus. Used to study childhood onset epileptic encephalopathy. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human CHD2 (chromodomain helicase DNA binding protein 2).

Ensembl:

ensembl_id ENSDART00000136434

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027341 lncRNA downstream 221444 24736359 ~ 24759440 (-) True XLOC_013438
TCONS_00026531 lncRNA downstream 234483 24741499 ~ 24746401 (-) False XLOC_013439
TCONS_00026971 lncRNA downstream 234551 24744790 ~ 24746333 (-) True XLOC_013439
TCONS_00026530 lncRNA downstream 234565 24741499 ~ 24746319 (-) False XLOC_013439
TCONS_00027340 lncRNA downstream 419000 24497624 ~ 24561884 (-) False XLOC_013437
TCONS_00026537 lncRNA upstream 1623 24990268 ~ 24996634 (-) False XLOC_013441
TCONS_00026535 lncRNA upstream 1623 24990268 ~ 24996735 (-) False XLOC_013441
TCONS_00027342 lncRNA upstream 1623 24990268 ~ 24997070 (-) False XLOC_013441
TCONS_00027343 lncRNA upstream 191894 25180539 ~ 25189610 (-) False XLOC_013445
TCONS_00027344 lncRNA upstream 191894 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026521 mRNA downstream 1105514 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA downstream 1105665 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA downstream 1105955 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026514 mRNA downstream 2227247 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 2227247 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026538 mRNA upstream 7374 24996019 ~ 24996634 (-) True XLOC_013441
TCONS_00026539 mRNA upstream 38850 25027495 ~ 25051846 (-) True XLOC_013442
TCONS_00026540 mRNA upstream 85339 25073984 ~ 25177230 (-) True XLOC_013443
TCONS_00026543 mRNA upstream 240989 25229634 ~ 25279323 (-) False XLOC_013446
TCONS_00026544 mRNA upstream 256896 25245541 ~ 25276932 (-) False XLOC_013446
TCONS_00026529 other downstream 420487 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 504001 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026525 other downstream 504770 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other downstream 664585 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026523 other downstream 957871 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026536 other upstream 1623 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026541 other upstream 170016 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026548 other upstream 527248 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026554 other upstream 766193 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 866365 25855010 ~ 25905598 (-) True XLOC_013452

Expression Profile

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