RNA id: TU41888



Basic Information


Item Value
RNA id TU41888
length 395
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G37036
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34910518 ~ 34911164 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caatcaatcaaattaatttttttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcgggtgaagaagcacggtggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacaaaacatggtcaagatgttcaaatgttcataaatgaccagcatggtcgaataataatgaggcagaatagttgaaactggagcagcagcacagtcaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41917 lncRNA downstream 2925 34907382 ~ 34907593 (-) True G37065
TU41915 lncRNA downstream 11981 34898338 ~ 34898537 (-) True G37063
TU41914 lncRNA downstream 12552 34897750 ~ 34897966 (-) True G37062
TU41913 lncRNA downstream 13054 34897133 ~ 34897464 (-) True G37061
TU41905 lncRNA downstream 28389 34881801 ~ 34882129 (-) True G37053
TU41927 lncRNA upstream 9472 34920636 ~ 34921022 (-) True G37074
TU41929 lncRNA upstream 14035 34925199 ~ 34925435 (-) True G37076
TU41941 lncRNA upstream 34544 34945708 ~ 34946038 (-) True G37087
TU41980 lncRNA upstream 91778 35002942 ~ 35003215 (-) True G37126
TU42002 lncRNA upstream 122815 35033979 ~ 35034184 (-) True G37142
XR_005041872.1 mRNA downstream 42223 34856461 ~ 34868295 (-) True LOC118947385
NM_001124600.1 mRNA downstream 219559 34686750 ~ 34690959 (-) True zp2.3
XM_036976547.1 mRNA downstream 246047 34659087 ~ 34664471 (-) True LOC110521923
XM_036984838.1 mRNA downstream 250365 34647385 ~ 34660153 (-) False cpt1
XM_021599989.2 mRNA upstream 370121 35281285 ~ 35285817 (-) True LOC110521966
XM_036989454.1 mRNA upstream 375377 35286541 ~ 35287452 (-) True odf3b
XM_036973693.1 mRNA upstream 402789 35313953 ~ 35315936 (-) False LOC110520384
XM_036973075.1 mRNA upstream 402789 35313953 ~ 35316025 (-) False LOC110520384
XM_021597707.2 mRNA upstream 402789 35313953 ~ 35316192 (-) True LOC110520384
TU40907 other downstream 529286 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 547782 34277700 ~ 34362736 (-) True G36141
TU40263 other downstream 1042473 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 1458105 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 1802021 33107119 ~ 33108497 (-) True G35075
TU42180 other upstream 362545 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 529754 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 672128 35583292 ~ 35583608 (-) True G37976
TU43028 other upstream 810276 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 1458930 36370094 ~ 36409019 (-) True LOC110522187

Expression Profile