RNA id: TU42180


Basic Information

Item Value
RNA id TU42180
length 4248
RNA type TUCP
GC content 0.43
exon number 2
gene id G37310
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35273709 ~ 35278005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taatatataTCAAAGGGTCCTATAATGATTACAGATTTGGAGTTCagtctgtgtctctgtttgtgcaaatgtgtgtgtgcaccacgtgtgagtgtgtttgtgtgagacacAGCCACTGCCAGGAATCTCTGATGGTATTAAGGCTACAGTGGACTCACTTCGAGGGTTTGAACtagcgcacacacatacatacacgcaccacacagaggagaggggggagtgtaCAGAGAGTCAGGGTGTTCCTCCCTTCACAGCCTGCATGCGCTGTAACGAATGGTGGCTGTATTGCTAGCACCGTGTTTTGTGCAAATCATCTCCTAGTTCAGAGTTCATAGAAAGAATACAATCTGATCACACATTTTTTCCTCAGTGATTAACTATGCATATATGCCAAAcattcatatatagatctatatattttttgattTTCAAAAATGTATATGAAAACTATCATATATACATTGCTTTTGATTAATATAAAAAAgcaaatatttgtattttgtcCATATTTACAGGGTGTACGTCATTTTGAGAGGTTTAAATACTTTAGTTTCTCTTTTTCTTGGTCACTCTGAAATTCAGATTAGGTGAGTGAATAGAAAAAGTTCTTAATGTCTTAATCCAAGAGCTACAAAATCCACCCCTACATTATGGGGGGGACATAAATAAACACAAACCAACAATCAACTCTTacattatgggggggggggggcgacataACAAATAAACACAAACCAACAATCAACTTTTACAttatgggtgggggggggggggacataacaAATAAACACAAACCAACAATCAACTTTTACattatggagggggggggggggggggggcggcgggGGCATAACAAATAAACACAAACCAACAATCAACTCTTacattatggggggggggggggtgggggcatAACAAATAAACACAAACCAACAATCAACGCTTacattatggagggggtgggggCATAACAAATAAACACAAACCAACAATCAACTCTTacattatgCAGGGGGGGACATAACAAATAAACACAAACCAACAATCAACCCCACACAAAAGCCTAAATGAGTCAGACGGTATGGTAGTGGCCCAAAATATATCCTTTTCCTTAAATAGTGCCACAAAATGTAAAATGGAGGGCACTATAGGGATAAGGGTGTCATTTAGAACACCCCGCATGTTGTCCAGAATCAGGAGTGAGATCGTCTGTGAGGTCCAATGTGAGACAGTGAGCGTTATCCCTACAACCTTCACACAACGTTGAATTTACCACCTGTTAAATGGATACAAAGGAACGTTTCACAGAGATAGATTGCCAAGGATCTTAACTGAGCATAAAGGTTTCAGTGCTACTGTTGACTAGTTAAGGTTTTAGTGGTAGTCGAGCccacctgggtcatgttcagggGAGTCCAATGTTAAACATCAATGTAGATAGTCATGTATTATAGAGAACAGACATGCTTCACTGTTGAGAAACCTATACTACATATTCTTTACCTACAAAAGCAAAAAATCAACTTGTATAATAGCGAATCATGTTTGTTCTTTATAAGACGTCCATGACTGTTGTACCATGTCAGGTCTAtttgctgctattggaccaggtctctcttggaaaagagatgttatctcaaggagaaaaaacctgtataaataaaggtcaaataaatcaaatcaaataaatctGCGGTATTCAGAATGTTGCTCCCTCTTAAACGCACCACTGTTGTTCTCccgttgtgttgttgtgtgtatgGATGACACTCACTGTCTCTAACCATTGAGAGAAGCTATTCACATTACAATTGTTGATTTCTTAAGACATCTCGTTCTATAACCCAAACCATGGTCTGAGATGTAGATAATGATGCTACTGGTCTTAGGTTGGATGAggattgtgtctgtgtctgtgtgtgaatctaagtgtgttATTTGTTTGACCAGGTGAATGTtcatgtgtgtacagtatatatagatgtaagatcttcatttgagccagtttgctatagcaggaaaataatcctgcagcaacaggaaatgtgaattattattatattataattaatggacattttttgtaggggttgatacaaaatcaagtctgacatttcaaagtgtaaattacaaacttcagaagcctacAAGCACTACAAGTGCAGGAAAGTTGCAGGAAAGTTATTCTGCAACAGGCTGATAATTAAGACTCTATCTGTGTATGTCTACATCTGAGTATGTGTTGAGGTCACTGGGTTTAAACTGGGGTCAACTGTGGTTTCACACCCCTCACTGTGTGGGATACCCTTCAGCATGACGGAAGACCGCAAGAAAACAAGCGGAAACGAAAACACAACCTTCTGTTCAAGACGTGATGCAACTTCTCATGCTACTGTTCAGGAAAGAGTGACCATAGAAGGACAGTTAATCAATAGGGTGTTGTATATTGAATATGTATAGTTTTAGTAAAGTTGTATATTTTATGAAATCTATACACCTtctttcaaatatatatatatatatatatatattattggtaaaaacaagaaaattgttgGTGGAATAAATGTTAAAGTTTTCTCTCTGTACTCTGTCTAGAAGTAGGAGTCAGATGCTCTGTATATAACGTATCTTTTTTTCAACGTTCTGTCGTCCCCCCCCCTCAAAgctatttaaatacatttatattatatatatttataatattcCCTTTGGAAACCCAAAGCAAATGTTTTGATTATGAAAAAAGCCACTAGTGTTGGTTAAACATTCTCAAAATATAATAGATAGCACAGTCAGTCCGTGAGACAGTCCCAGGATAGATGAGTTCTCCCCACGTGGTCTCCAACACCAAACTCTGTCTCTGGGCACAAGTGTTGAACACAATGCCAGGCAGAGTGGAGAGAGGCCTGTGTCAGTACTGTATCAGTATGTCAGTTCTATGTCAATACTAGGTCAGTACTGTATCAGTATGTCAGTTCTATGCCAAAACTAGGTCAGTACTGTATCAGTATGTCAGTTCTATGTCAATACTAGGTCAATACTGCGTCTTTACTCCTGTGTTCAACGTAGCTGATCTCTGTAAGAATATTTTGAAAGGCAACTGAACTTTCCGTTTGGAACGAgattcatcctcctcttcttcacacAAACTGGGGATCCTTCAGAGGCAAAAAATGAAcaggagggaaagagatggaggtACAGGGAGAAGAAGAACGGCACAGTGAAGGAAAGGTCTGTGGGTAGGTTAAAGGTGTGACTAAAGGAGCAACTCAAGCAGTCACAAATCAAATGTTCTAATCGGAGCTCATGCGAGATTCTGTTCTGCAAAGAGTTTATGTGCCTCTTTCAGAGGACTCATCTGATAGGTTGTGAGATGGGGGAGGGACTTCATAATTCAGTGCAGTGCTGAGAGCTGCATATGAACGCAATCACTGAAACTTTCAGACACAtcagaataaaaataaatgaaaagcaGCGACCTAAAATGGAGTTTAAAACTGGGGTGGTCTatccatttttctctctccctctttctttctttctctctctctctctctctctctctctcagggcaggGGTCAGCTCTCCAGCAGCTGTTTGAGTGCTCGTTCGATGTTCATGCGGTGTCCCACCCGCGTCACCCCCAGCTCAGCAAAGTCGTCCTTGGTGAGTGCTGGCAGGTGCGAGCCCTCAATCTCATGCTCCTGAAAGCCGGCCCTGTGCTCCCCCAGGTGGATGCTCTCCAGCCAGTCTCCAACGTCGTACTTGTTCCACAGGTGGAGGGGCTTCTGGTGGAAGGGCCTGAGGGCCAGGAGGGGCGAGCCCAACccaggagagtgagagggagacggggagcgGGACCGGGCGCTGGAGCTCCTCATAACAAAGCGCACTTCTTTGGGCTCATGGGGCAGGCTGAGGCTGGATGACTTGAGGATGGTGTGGGGCGGCGTGGTGGGCGAAATGGGTAAGCCGAAGCCTGGGAGTCGACTTAGGGGGTCACCCCGATCTGGGGAGCCCGAGCCGGGGCTTGGGATTCGGCGTGTTATGGGGTAGCGGCTGCCGGGCCGGATGGTGTAGGAAGTGCCGTAGCTTCTCTGGGAAATGGTGTGGAGCTCTCCTAGACTGCTGAAAAGTCTGGAGGAGAGAGcgaaagattgagagagagagagagagagagagagagagagagagagagagagagagagagagaaggagagggtgtttgggagggaaagaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42058 lncRNA downstream 162414 35110630 ~ 35111295 (-) True G37196
TU42044 lncRNA downstream 182334 35091116 ~ 35091375 (-) True G37184
TU42041 lncRNA downstream 188483 35084985 ~ 35085226 (-) True G37181
TU42040 lncRNA downstream 188789 35084576 ~ 35084920 (-) True G37180
TU42038 lncRNA downstream 190734 35082632 ~ 35082975 (-) True G37178
TU42192 lncRNA upstream 21328 35299333 ~ 35299619 (-) True G37322
TU42193 lncRNA upstream 22173 35300178 ~ 35300431 (-) True G37323
TU42200 lncRNA upstream 34814 35312819 ~ 35313055 (-) True G37329
TU42877 lncRNA upstream 146235 35424240 ~ 35424504 (-) True G37901
TU42857 lncRNA upstream 155789 35433794 ~ 35435084 (-) True LOC110532260
XR_005041872.1 mRNA downstream 405414 34856461 ~ 34868295 (-) True LOC118947385
NM_001124600.1 mRNA downstream 582750 34686750 ~ 34690959 (-) True zp2.3
XM_036976547.1 mRNA downstream 609238 34659087 ~ 34664471 (-) True LOC110521923
XM_036984838.1 mRNA downstream 613556 34647385 ~ 34660153 (-) False cpt1
XM_036986122.1 mRNA downstream 613557 34647385 ~ 34660152 (-) False cpt1
XM_021599989.2 mRNA upstream 3280 35281285 ~ 35285817 (-) True LOC110521966
XM_036989454.1 mRNA upstream 8536 35286541 ~ 35287452 (-) True odf3b
XM_036973693.1 mRNA upstream 35948 35313953 ~ 35315936 (-) False LOC110520384
XM_036973075.1 mRNA upstream 35948 35313953 ~ 35316025 (-) False LOC110520384
XM_021597707.2 mRNA upstream 35948 35313953 ~ 35316192 (-) True LOC110520384
TU40907 other downstream 892477 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 910973 34277700 ~ 34362736 (-) True G36141
TU40263 other downstream 1405664 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 1821296 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 2165212 33107119 ~ 33108497 (-) True G35075
TU42883 other upstream 162913 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 305287 35583292 ~ 35583608 (-) True G37976
TU43028 other upstream 443435 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 1092089 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 1230533 36508538 ~ 36510829 (-) True G38855

Expression Profile