RNA id: TU42192



Basic Information


Item Value
RNA id TU42192
length 287
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G37322
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35299333 ~ 35299619 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttctacatatagttagaaagatacactgcttctttatgcaaccgctttgttagatttatttttaacgttacagaaatcgcacactattcaatatgctgagacggcgctcagttccaagctacatttctacgtaatgttggagtcaacagaaacacagatttaagcataaatattcccttaccttcgatggtcttcgttcagaatgttctggaaggcttcatacttacccaatacatcgttttgtttcaagtcttgcgtctttgtattagctactgctaataacatc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU42058 lncRNA downstream 188038 35110630 ~ 35111295 (-) True G37196
TU42044 lncRNA downstream 207958 35091116 ~ 35091375 (-) True G37184
TU42041 lncRNA downstream 214107 35084985 ~ 35085226 (-) True G37181
TU42040 lncRNA downstream 214413 35084576 ~ 35084920 (-) True G37180
TU42038 lncRNA downstream 216358 35082632 ~ 35082975 (-) True G37178
TU42193 lncRNA upstream 559 35300178 ~ 35300431 (-) True G37323
TU42200 lncRNA upstream 13200 35312819 ~ 35313055 (-) True G37329
TU42877 lncRNA upstream 124621 35424240 ~ 35424504 (-) True G37901
TU42857 lncRNA upstream 134175 35433794 ~ 35435084 (-) True LOC110532260
TU42856 lncRNA upstream 136701 35436320 ~ 35436773 (-) True G37884
XM_036989454.1 mRNA downstream 11881 35286541 ~ 35287452 (-) True odf3b
XM_021599989.2 mRNA downstream 13516 35281285 ~ 35285817 (-) True LOC110521966
XR_005041872.1 mRNA downstream 431038 34856461 ~ 34868295 (-) True LOC118947385
NM_001124600.1 mRNA downstream 608374 34686750 ~ 34690959 (-) True zp2.3
XM_036976547.1 mRNA downstream 634862 34659087 ~ 34664471 (-) True LOC110521923
XM_036973693.1 mRNA upstream 14334 35313953 ~ 35315936 (-) False LOC110520384
XM_036973075.1 mRNA upstream 14334 35313953 ~ 35316025 (-) False LOC110520384
XM_021597707.2 mRNA upstream 14334 35313953 ~ 35316192 (-) True LOC110520384
LOC110532260 mRNA upstream 135176 35434795 ~ 35694776 (-) False LOC110532260
XM_021600073.2 mRNA upstream 443031 35742650 ~ 35749548 (-) False LOC110522006
TU42180 other downstream 21328 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 918101 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 936597 34277700 ~ 34362736 (-) True G36141
TU40263 other downstream 1431288 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 1846920 33442368 ~ 33452413 (-) True G35299
TU42883 other upstream 141299 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 283673 35583292 ~ 35583608 (-) True G37976
TU43028 other upstream 421821 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 1070475 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 1208919 36508538 ~ 36510829 (-) True G38855

Expression Profile