RNA id: TU42856


Basic Information

Item Value
RNA id TU42856
length 454
lncRNA type intronic
GC content 0.45
exon number 1
gene id G37884
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35436320 ~ 35436773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacttTTGCTGCTGTGCCAGTGCACTGCACTGAACAGTGCTCTGCAGTCTTTCATCAGTGCTCTCCACCAGTCTCATTTGTAGATAAATAGCAGTGAGCCAGGGATAACTATTTAATGTGTGTCTATAGAAGTCAGCTCCGGAAcagtctcttctcttctcacAACGTCACAGCAGCTTTTAGCCAGCAGCAAGGCTATATGAAAGATCCCTCTGAGTGCCTGACTTCTGGCTGTAATTCTCTCTGACGTCTGTTTCAAATGCTGTGGAATCTCTCttcctgtcgctctctctctccttctcgttCCCCCTCTCCGCTCCTAATTACCGACTGTGACGGTAATTAGGGAGGCATGTCTCAGTACAGTTTGACTACAGACTACGGAATACTGGATTTGAGATGTTAAACTGAGAAATACAGAAGTAATTTCCCACTTAATTAGAGAGTATAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42857 lncRNA downstream 1236 35433794 ~ 35435084 (-) True LOC110532260
TU42877 lncRNA downstream 11816 35424240 ~ 35424504 (-) True G37901
TU42200 lncRNA downstream 123265 35312819 ~ 35313055 (-) True G37329
TU42193 lncRNA downstream 135889 35300178 ~ 35300431 (-) True G37323
TU42192 lncRNA downstream 136701 35299333 ~ 35299619 (-) True G37322
TU42904 lncRNA upstream 32566 35469339 ~ 35469648 (-) True G37928
TU42906 lncRNA upstream 34555 35471328 ~ 35471681 (-) True G37930
TU42910 lncRNA upstream 44653 35481426 ~ 35481626 (-) True G37934
TU42917 lncRNA upstream 59490 35496263 ~ 35496550 (-) True G37941
TU42922 lncRNA upstream 64431 35501204 ~ 35501424 (-) True G37946
XM_021597707.2 mRNA downstream 120128 35313953 ~ 35316192 (-) True LOC110520384
XM_036973075.1 mRNA downstream 120295 35313953 ~ 35316025 (-) False LOC110520384
XM_036973693.1 mRNA downstream 120384 35313953 ~ 35315936 (-) False LOC110520384
XM_036989454.1 mRNA downstream 148868 35286541 ~ 35287452 (-) True odf3b
XM_021599989.2 mRNA downstream 150503 35281285 ~ 35285817 (-) True LOC110521966
XM_021600073.2 mRNA upstream 305877 35742650 ~ 35749548 (-) False LOC110522006
XM_021600080.2 mRNA upstream 305877 35742650 ~ 35749578 (-) False LOC110522006
XM_021600087.2 mRNA upstream 305877 35742650 ~ 35749585 (-) False LOC110522006
XM_036976665.1 mRNA upstream 305877 35742650 ~ 35749598 (-) False LOC110522006
XM_036976657.1 mRNA upstream 305877 35742650 ~ 35749599 (-) True LOC110522006
TU42180 other downstream 158315 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1055088 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 1073584 34277700 ~ 34362736 (-) True G36141
TU40263 other downstream 1568275 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 1983907 33442368 ~ 33452413 (-) True G35299
TU42883 other upstream 4145 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 146519 35583292 ~ 35583608 (-) True G37976
TU43028 other upstream 284667 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 933321 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 1071765 36508538 ~ 36510829 (-) True G38855

Expression Profile