RNA id: TCONS_00027342


Basic Information

Item Value
RNA id TCONS_00027342
length 6803
lncRNA type sense_over
GC content 0.32
exon number 1
gene id XLOC_013441
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 24990268 ~ 24997070 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAGGCTATAATCTGCAAAGTAAGTATAAAAAATATTCCAGTAGACTATATAAATTAAACTTTCTTCTTGGTTATAACCAAACAGAATTGAAGAGCTCTACATGTTGCACTGTTTTCTAAATAGCCTATCATTCCTTCATATAGCATAACTATAGCCTAATAATTTGAACACTTGGACAGGTTTTGTATTTGTATAAAACGTGAATGCTTTGTTGTTATATCATTGGTATTTTGGCATGGAATTTTCAATATTCTAGTATAAAAATCCGCTTTTACCCTTACTGAAATGAAACATTATTATAAATCCTCAATCATGGATGCTGTGTTTCTTCTACCCAGAATGCTGCGGGGAGAGGAAGTAGTGTGTGTGACGCTGAGGCTCAGGGCTGAGCTCAGGATCAGTATAACAGCACAGGCGGAGAGAGAGATCGCGCACAGCGGAGGAGAGACGAGCTCAAGGCGGACACGGTGATGTGGAGCGGCGGAGCTGAGCAACAACACCCTAAAACCGACAAATCTCACCGATGCAATGGCGTCGACAGCTCAAGAAGAAAGAACAGATCGCAGCGGTGGCGATATGGTAAGATTTCTTTATAGGTTTGAACTTATAATCTTGTTTGAGCGCGGGAACAGGCGCACCAATATGGTGGAAAAGGAGAGCCTTCGACGAGGTGTTGTAAAATGGCCATGATGGGGCCATTGCCAAGTACTGAAAATTGGCTTTTCTTCGGTTTAATCGACGATTTTGATGTAAAAACATCGTGAAATCGTTCGGAAAACAGTGCATTGATATGTTGCAGGAAAACTGTGAAGATTTCAACTGACAGCAACGAAGAGATCCGAGGATTTAACTGTCTACGCATTTTAAATTCGCTTTGTCCTTGAGAGGACAAAATGTCCTTGTAACATTCGACAacgaaaaaatatttaaaaccgaAATATTGCTGTAACATTGTGTTTTTGACGCTCCATTTCCAGTCTCGACATTTTGAGTGTCTTTTGTGGATTTCtgatattttatttgaataaacaattttattaaacatttaaatgcatttattgtcTGTTAATTActgaaaaatgttttcttttattctcGGGTGTACATTTGATTTGAACTTATTCAAAGAACATTGTGAATATGTCAACTTGCCATAGGATTTAATACATAATTTtgatgttttagtttatttttagattttgttaTTTGGATTAAATGTAGTAGTtacatgtttattcatttatggtTTTTTTTACACTTGAGAATGAACCTAAATAAACACATCCACTTGTATTTCTtgtgttttgtaaaatgtttatgCTGTATTTTTCGATGTTAAATAACAGGGTGTTGGCTTTTAACCCATTGTGGCCCACAAGAAGACTTTgttctttaaaaatgtgtaaaaatttgtttctttatttctgtttttccGTTTTGCTCAGAGATttgttttaagttcatttttatCTCAACAGAAGAGTTTTTTATCATTAAATGTCTGAAATTTGTGcacaatttttaataaatatatgaaaaggTCAGATTAAACCTggacttttatttagtttttgtactGGTTACTACTATAACTTGGATAAGACTCAACATAAAAAGCAATactgtttagtttgttttaaagtgGGGAAACATTAACTTTGAAATATTGTGGGTCTTTGTTATAAACATGTATGAAATCAATTGTTCACTTTGCAAGAACAAATGTtgcgtttaaaaaaataataaaaataaatccaacACCCACtgatgattttaaataaaataggtTTCATATTTATGTATGTTCTTTAGTTTATGGTGTGATATATTATGTACTTTGAATAATTTTCAGCACAAATACATGGAATTTACCTTGGCTTTAGCTACAGAAATCATATTTAATGTGAACAAACCAAATGACAAAACATTTTGAAGCTTCAGTAAATGTTACAATGCAAAGTTCTTACAATACTAATTGTCGAAAACGTATGTTTTTGTGTACAGAAGTCAAGAAAACTGGATGAAGGATGAAGGAGTTTCGTTCAGTTTTTATGACATGTAAGTGTCATTACTTTACTTAAATTTTACTGTAAACATCTTGCATTCACATTTAGCAATAATTTACTGTAAACATCTTGCATTCACATTTAGCAATAATTTACCTTATCATTGACCACCACTAGGGTGTGCTTTAAATTGAATTGTAGACTGTATTATCATTCTAACGAAGAACCTTTTGTTGTCAAGGTTCCTAATCTTCGAGATGTCTGAGAGAAATGAGGACAATGGATTTTGATGTAAGTATTTCATTTAAGGGAACCTTATAGAAATAACTGCGCCATAAACAATTTCCTGACTTTTTGTAAAAACGTTTTTTTCATTAGTTACTTTCATTTAGCCTCAAGTATTATTAAGGATTTTTACGCAATCATAATCATTTCATCTATATAATTTTCTGTTTACATAGTAATGttcaataaattcaaataaagtcGCAGTTATTTTCATCAGAGAATATAAAGAACCTGAATTTGCTGTGCCaaccacaaatatatatttttaaacaaacattacaaTTGGTGTTGGAAGCTTTGAATAGAAAAGTATAATgaagtataaaaaatataattattattaataataactttaaacaTACCCTTCAAAAATTTGACAATTTGCAGTTtttgataaaaaagaaaattaaggtGATATTACAGAAGTATATTGGAGTAGTGTTGGAAAAATGCTATTTAGTGTCATTATGTAATATAACAAAAGGAAGGATAAGTATAAAggcatttcagtttttttaatataattgtatttatatttttaatttcacatttcaaaactattttctcGTTTTGTTGCTTGTGAACATGGATAATACTTCACTttaagtaacaaattaaacaTTGTATCATACTTGTTCTCTCACAACAAATTTACTTATGAAGCAAATACAAATCTTTAACAAAAAACATTCACTTCCAACTAATTCTAGAAAAAACAGATGATACTAACATCACTTATTAAAAAAGCATTTGTACGTAAAAAACATTTCGAAAAATTTTGCACATAACTTGGCGCATTTAgaacaggactgatttttctactcagccaatcatTCAATCACATGCAGTAAATaaggttttagtttgtttttttctactaaaagacatcaacatttttttcttttgaaaaagttGTTCAACATTTAGTTTACTACTGTTTATCTCCCACCCATTATTTTATGTTCACTAACATTAAGTCTTCATTCAAGACTATTTGAAAGcaaaatttattgtttattttgcttgggcacattgttattttttaggaAAACAAATCATGCAAGTTGATCCaatgaaaaaagtttgttttggtaatctttaatcaaaatctaacCATTTGCCTCTGCGGTTGGAACAGCAGTTTTTctctgatgtcagtttgacggcttcagctacaatattcttaaccatgcctttcttaccgttagtttgctctgagggaatgatgcgcaaaaaaaaTGCCCCGCCCTTAcgcaatattttgttttagttgGAAGTACACCAACATACTAAAAATAAGTTTATACAACTTCAAGTTCACACAGTCTTTAAATACAGTAAAAGATTGTTTACTTCTAGCAAAAGAAAACACAAGTTCAGTTTATCAACAGTTATCATTTCATAAGTTATCTCACACATCAATCACCTTGGAATTAAACTGACAAGCAGGAGTAACTTCGCAACACTGCAATTCTTACTTTAATTTTCAGTTAGCACTACAGCTTGTGGGAAATTAGTAATAACTTGTTTATTATTGCCAAATGACATATAATTACTCGTAAATATTACAGCTTAGTAAGCAACTCGCCCTGCTCAATTTGTGCTTTAGGCAAGAACATGAAGTTGTTATATCTTTCAAAATGTTCAAACTCAGAAATTTGATATGGAGAATATTAGACCTTGAAGGTAAAAAAGGGGGTGGGGGTTGGCAATGCTATTTAGAAGATGCAAGGAAAACCACTAAAAGGTTAAGACTTCATTCTTTCCGCTTAAAAGATATTTTGTCTTTAAACATAGGCAGTGgggaattattataattttttaagtttagttttttttttttttttttttttgtatacctCTGATCTAATTGATTTTATTTCTACCAGCAGATGAAGTTGGCTTGTAGAGGACCTTCACCAAAGTTCAAGAAAAAGAAGACTGCTCTGTAAGTCTATACAGTGTTTTTTGTATTATTAGGATAGTACTACATATGTCTGTCATGTTAGCCATTTTTAAACTCCATagcttttttaagtgtttttgctttaaaaaatgtatagtatagtataatgcATAGTAAAATATGGATTCCTAGAATTGGTTTAGTTTTGTGCAAGTAATtacaaaagacaaagaaaaaaaaagtaaacttaaAAAATAGTGCTCATAGTGGATTCTTAAGCAAAGGTGCCAGGAAGAATCGAAATGGGAATTTCATAGTAATTCCATGGAAGAACCTATTTGTTTTGGGGTCTCTAAAGAACCATGTATAGAAAAATGTTTACTATAAAGAAGCTTTTGTGAAATGGTTCTTCATGGATTCATCAATGGCAACCTTTATTTAAGAGTGTGCATCTTGGGAAAGGGCTTCCTATTACAGCTTGGAAATGTGCAAATGTTTAGCCTTTTCATTGTGAGTTGTTATAGCCATATTTCATTTACCTGTCTTCAATATCTGAGCATGCTTGTGTTCTCCGTTCACTGGATCTTGTTTTTAGTGGAAACCTTTCTTGAGATCCATGGCTCCTTTCTTGTGGAGTCTGTTCTGCTTTTGTGTAACTTGTTTTACACATCTTTCTTGATTCTGTGCCACAATTGGCCTCCTTTTGTTTTCACTGGCTATTGCATACTTCATTATGCATTAAAGATTCCACTTGAGCCACATTTAAACTGGAATACATCACAGCATTTCTGCTTTTTCTATGTGACAAGGAGTGATGGCTGATACTTTTTCTGCTTTTGATTCTGTGAAATGCCCAGACACATCAGTGCATGAGGAATCATTTGCACATCAGTGCATGAGGAGTTTCCCCTCAAATTAAGTCATTGTTTAATTTGAGCTACCACTTAACTATTGTAATGAAACACTCGATGGAAAAAGCTTCAAAGAATTTGGAAGGAAATGATCTTAACTTCTTTATAAGGCTGCTGGCATTTTCAGTAAGCAAATGCAATGCATTCATTGAAAAAGATGTAACTTCATGTCCTCTTCATCATTTTCTCTGAAATCTACTTCATGCTTTCTGCTTTCCCCCTCTGTCTTTAGGGAATAAGTTTTTCTTTATCAAATTTCTGGCTTGTTTTTAGTAAAATCCCTTCATTCTAGTATTCGAATTTCATGGTATTTCATTGTGTCACTTCTCATTTTGGTGGTTATTAAGCCAcctttttgttcttgttttagtaaaaaaaaaaaaaatccaatgtcAGCATCCTTaaacatttgcaacaattttaccGGATCATTTCCTTTGCATTTTTAAGTTCAACTCAAGTCTCACATTGTAATAACAACTTTATAACATAGTaaggacaaacaaacaaaagtaattgacgttttcatttattttaatgttttttgttgacGTCACTGGGATACAACTTTGTTCTTTGGTAATTAAGTATTAACCCTATATAGGGCACTTATTGATTATACTTATCAGAAACAAAAACCTAGTGGTTCTAGGGGTTATTACAAAACTTGTGACTGTATGACTCTGGGGAGAAAAAAAGGCCTATTGTAATAGGTCAATGAATGTATGGTTATGAGAAcgtattaaaatgcaaaaattgtaagaaagtattttttttatgaagCACATTCAGAGAAATAATAGCTAATGACAGACATATGTAGAATGGACTATTAAAATGctttacatatacatattaatttttaGGCTTGctggaattaaaataaattgtgggGCCTATCATTATAGTTAGAGTTGCAGTGTAAAGAGTAAACTTAAAAGTGAACCAAATCCAACCACTATATTTTTACTTATCAAAAACTCAAGGTTTGGTAGCTTTGATAATTGAGATTGTGCTTCTGAAATTGTGTGAATAGAATGTAGTTGAATTTAgtcatgcaaaaaaaacaaacatgcagtAACTGTGTAGCATTCTTGTGTTAGCATTTTAGCCTTAATATGGATAATAGTGGATTTTGTTGATCACTTTGTTACACGACTATTTTATTGGCAAGatgtgcatattaatgaagttgttcTTCAGATTTACTATATGAAAGGTACCTTGCAGTATTGTCTCCAACTCTGTAATCGCTAATTGGAGAACGATGCAAAAGAATTTGGATGTAGTTTGGATTTgtaaaacaatttagttttgTCTGTAGCTGTATTATATTAGTACGTTAGCATTTTTATGAAAAGCTGTCATCGCATCTTAAGAATACATTTGGGGTTTACATGTTTCCTTCTCCTTTTTGATTTCATTTAAGAACCAATTCTGGACAGTCAAGTGGAGACTACTGCTTAATGAGGAAGATGGCGGCTCATATTTTGCTTTTGGATTTGAAAGAAAGACATTTTGTATTTTGCTATGATGTTTGAAATCGTTCGCTAATGTGCTTCAACAGTTGTATGTATTTCATGTTTTACTGCACTGTATTTGTTTCAATGAAATGCCtgtattttaaaactttaaatgctTCTTTTTGTCTTTTGAAACGAAAAATAAAAGTTCGTGTTTGAACAATGA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0006325 chromatin organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0070816 phosphorylation of RNA polymerase II C-terminal domain biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006996 organelle organization biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0043412 macromolecule modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0006464 cellular protein modification process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0007049 cell cycle biological_process
GO:0006476 protein deacetylation biological_process
GO:0016569 covalent chromatin modification biological_process
GO:0016570 histone modification biological_process
GO:0051276 chromosome organization biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0016575 histone deacetylation biological_process
GO:0044839 cell cycle G2/M phase transition biological_process
GO:0051292 nuclear pore complex assembly biological_process
GO:0033554 cellular response to stress biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0036211 protein modification process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0016043 cellular component organization biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0005819 spindle cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:1990234 transferase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:1902494 catalytic complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0005694 chromosome cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0097472 cyclin-dependent protein kinase activity molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027341 lncRNA downstream 230828 24736359 ~ 24759440 (-) True XLOC_013438
TCONS_00026531 lncRNA downstream 243867 24741499 ~ 24746401 (-) False XLOC_013439
TCONS_00026971 lncRNA downstream 243935 24744790 ~ 24746333 (-) True XLOC_013439
TCONS_00026530 lncRNA downstream 243949 24741499 ~ 24746319 (-) False XLOC_013439
TCONS_00027340 lncRNA downstream 428384 24497624 ~ 24561884 (-) False XLOC_013437
TCONS_00027343 lncRNA upstream 183469 25180539 ~ 25189610 (-) False XLOC_013445
TCONS_00027344 lncRNA upstream 183469 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026542 lncRNA upstream 183469 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00027345 lncRNA upstream 183469 25180539 ~ 25225436 (-) True XLOC_013445
TCONS_00026553 lncRNA upstream 599169 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00026532 mRNA downstream 688 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA downstream 1607 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026534 mRNA downstream 1623 24980884 ~ 24988645 (-) True XLOC_013440
TCONS_00026521 mRNA downstream 1114898 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA downstream 1115049 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026539 mRNA upstream 30425 25027495 ~ 25051846 (-) True XLOC_013442
TCONS_00026540 mRNA upstream 76914 25073984 ~ 25177230 (-) True XLOC_013443
TCONS_00026543 mRNA upstream 232564 25229634 ~ 25279323 (-) False XLOC_013446
TCONS_00026544 mRNA upstream 248471 25245541 ~ 25276932 (-) False XLOC_013446
TCONS_00026545 mRNA upstream 258607 25255677 ~ 25276262 (-) True XLOC_013446
TCONS_00026529 other downstream 429871 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 513385 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026525 other downstream 514154 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other downstream 673969 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026523 other downstream 967255 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026541 other upstream 161591 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026548 other upstream 518823 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026554 other upstream 757768 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 857940 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026563 other upstream 1206233 26203303 ~ 26203389 (-) True XLOC_013455

Expression Profile

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