RNA id: TU42928


Basic Information

Item Value
RNA id TU42928
length 403
lncRNA type intronic
GC content 0.49
exon number 1
gene id G37952
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35519958 ~ 35520360 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttacactactgctactctctgttcatcatatatgcatagtcactttaaccatatctacatgtacatactacctcaatcagcctgactaaccggtgtctgtatgtagcctcgctactgtatatagcctgtctttttactgttgttttatttctttacttacctattgttcacctagtaccttttttgcactattggtaagagcctgtaagtaagcatttcactgaaaggtgtcgtgcacctgttgtattcggcgctcgtgacaaatacactttgatgtGGGAGTCCTTGTTTGTATAATATCTTCGTTCTTAATCTCTGCCCTCAGGATACAAAGGCTAGTTCATCCAGAAAACTGGATTATCTCATTTagatgggacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42926 lncRNA downstream 1425 35518286 ~ 35518533 (-) True G37950
TU42922 lncRNA downstream 18534 35501204 ~ 35501424 (-) True G37946
TU42917 lncRNA downstream 23408 35496263 ~ 35496550 (-) True G37941
TU42910 lncRNA downstream 38332 35481426 ~ 35481626 (-) True G37934
TU42906 lncRNA downstream 48277 35471328 ~ 35471681 (-) True G37930
TU42938 lncRNA upstream 29444 35549804 ~ 35550016 (-) True G37962
TU42952 lncRNA upstream 41177 35561537 ~ 35561789 (-) True G37971
TU42955 lncRNA upstream 50551 35570911 ~ 35571115 (-) True G37974
TU42962 lncRNA upstream 70600 35590960 ~ 35591227 (-) True G37981
TU42963 lncRNA upstream 72347 35592707 ~ 35592913 (-) True G37982
XM_021597707.2 mRNA downstream 203766 35313953 ~ 35316192 (-) True LOC110520384
XM_036973075.1 mRNA downstream 203933 35313953 ~ 35316025 (-) False LOC110520384
XM_036973693.1 mRNA downstream 204022 35313953 ~ 35315936 (-) False LOC110520384
XM_036989454.1 mRNA downstream 232506 35286541 ~ 35287452 (-) True odf3b
XM_021599989.2 mRNA downstream 234141 35281285 ~ 35285817 (-) True LOC110521966
XM_021600073.2 mRNA upstream 222290 35742650 ~ 35749548 (-) False LOC110522006
XM_021600080.2 mRNA upstream 222290 35742650 ~ 35749578 (-) False LOC110522006
XM_021600087.2 mRNA upstream 222290 35742650 ~ 35749585 (-) False LOC110522006
XM_036976665.1 mRNA upstream 222290 35742650 ~ 35749598 (-) False LOC110522006
XM_036976657.1 mRNA upstream 222290 35742650 ~ 35749599 (-) True LOC110522006
TU42883 other downstream 78630 35440918 ~ 35441328 (-) True G37907
TU42180 other downstream 241953 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1138726 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 1157222 34277700 ~ 34362736 (-) True G36141
TU40263 other downstream 1651913 33867558 ~ 33868045 (-) True G35628
TU42957 other upstream 62932 35583292 ~ 35583608 (-) True G37976
TU43028 other upstream 201080 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 849734 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 988178 36508538 ~ 36510829 (-) True G38855
TU45214 other upstream 2196180 37716540 ~ 37717033 (-) True G40079

Expression Profile