RNA id: TU42962


Basic Information

Item Value
RNA id TU42962
length 268
lncRNA type intronic
GC content 0.41
exon number 1
gene id G37981
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35590960 ~ 35591227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggaaatctttttgtatccaaatccggctttaaacttcttcacaaaagtatatcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42955 lncRNA downstream 19845 35570911 ~ 35571115 (-) True G37974
TU42952 lncRNA downstream 29171 35561537 ~ 35561789 (-) True G37971
TU42938 lncRNA downstream 40944 35549804 ~ 35550016 (-) True G37962
TU42928 lncRNA downstream 70600 35519958 ~ 35520360 (-) True G37952
TU42926 lncRNA downstream 72427 35518286 ~ 35518533 (-) True G37950
TU42963 lncRNA upstream 1480 35592707 ~ 35592913 (-) True G37982
TU42967 lncRNA upstream 7086 35598313 ~ 35598555 (-) True G37986
TU42974 lncRNA upstream 22217 35613444 ~ 35613652 (-) True G37993
TU42977 lncRNA upstream 26129 35617356 ~ 35617570 (-) True G37996
TU42993 lncRNA upstream 56522 35647749 ~ 35706760 (-) True G38010
XM_021597707.2 mRNA downstream 274768 35313953 ~ 35316192 (-) True LOC110520384
XM_036973075.1 mRNA downstream 274935 35313953 ~ 35316025 (-) False LOC110520384
XM_036973693.1 mRNA downstream 275024 35313953 ~ 35315936 (-) False LOC110520384
XM_036989454.1 mRNA downstream 303508 35286541 ~ 35287452 (-) True odf3b
XM_021599989.2 mRNA downstream 305143 35281285 ~ 35285817 (-) True LOC110521966
XM_021600073.2 mRNA upstream 151423 35742650 ~ 35749548 (-) False LOC110522006
XM_021600080.2 mRNA upstream 151423 35742650 ~ 35749578 (-) False LOC110522006
XM_021600087.2 mRNA upstream 151423 35742650 ~ 35749585 (-) False LOC110522006
XM_036976665.1 mRNA upstream 151423 35742650 ~ 35749598 (-) False LOC110522006
XM_036976657.1 mRNA upstream 151423 35742650 ~ 35749599 (-) True LOC110522006
TU42957 other downstream 7352 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 149632 35440918 ~ 35441328 (-) True G37907
TU42180 other downstream 312955 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1209728 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 1228224 34277700 ~ 34362736 (-) True G36141
TU43028 other upstream 130213 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 778867 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 917311 36508538 ~ 36510829 (-) True G38855
TU45214 other upstream 2125313 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 2534053 38125280 ~ 38125725 (-) True G40732

Expression Profile