RNA id: TCONS_00026541


Basic Information

Item Value
RNA id TCONS_00026541
length 117
RNA type rRNA
GC content 0.49
exon number 1
gene id XLOC_013444
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25158661 ~ 25158777 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTACAGCCATATCACTCTGCAGCCCAAAACCAGTTACtctctgaagctaagcagggctgagcctggtcaatacctggatgggtGACCATgtaggaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000179653

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027342 lncRNA downstream 161591 24990268 ~ 24997070 (-) False XLOC_013441
TCONS_00026535 lncRNA downstream 161926 24990268 ~ 24996735 (-) False XLOC_013441
TCONS_00026537 lncRNA downstream 162027 24990268 ~ 24996634 (-) False XLOC_013441
TCONS_00027341 lncRNA downstream 399221 24736359 ~ 24759440 (-) True XLOC_013438
TCONS_00026531 lncRNA downstream 412260 24741499 ~ 24746401 (-) False XLOC_013439
TCONS_00027343 lncRNA upstream 21762 25180539 ~ 25189610 (-) False XLOC_013445
TCONS_00027344 lncRNA upstream 21762 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026542 lncRNA upstream 21762 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00027345 lncRNA upstream 21762 25180539 ~ 25225436 (-) True XLOC_013445
TCONS_00026553 lncRNA upstream 437462 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00026539 mRNA downstream 106815 25027495 ~ 25051846 (-) True XLOC_013442
TCONS_00026538 mRNA downstream 162027 24996019 ~ 24996634 (-) True XLOC_013441
TCONS_00026532 mRNA downstream 169081 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA downstream 170000 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026534 mRNA downstream 170016 24980884 ~ 24988645 (-) True XLOC_013440
TCONS_00026543 mRNA upstream 70857 25229634 ~ 25279323 (-) False XLOC_013446
TCONS_00026544 mRNA upstream 86764 25245541 ~ 25276932 (-) False XLOC_013446
TCONS_00026545 mRNA upstream 96900 25255677 ~ 25276262 (-) True XLOC_013446
TCONS_00026546 mRNA upstream 232394 25391171 ~ 25401002 (-) False XLOC_013447
TCONS_00026547 mRNA upstream 232394 25391171 ~ 25402715 (-) True XLOC_013447
TCONS_00026536 other downstream 162014 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026529 other downstream 598264 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 681778 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026525 other downstream 682547 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other downstream 842362 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026548 other upstream 357116 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026554 other upstream 596061 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 696233 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026563 other upstream 1044526 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026577 other upstream 1721695 26880472 ~ 26894703 (-) False XLOC_013464

Expression Profile

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