RNA id: TU43034


Basic Information

Item Value
RNA id TU43034
length 1426
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G38047
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35724308 ~ 35726101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGCTGAGGGGGATTGATGGAGGCTGTGGTCCCCCCTACTGTGGAGCTCTGGTCCTGGAAGGACATGGGCTCTGCTGGGTCAGACCGGGCCACCCCTACCCTGATCCCGACCATGGTGGGctgggagaacaggaggggagcAGGGGTGTCCTGGGGGTGAGGGGTGCTGCTGCCCATAGAGAGGCCCTGGGTACTGAAGAGGAGGGTTGGAGGCAGAGCCTGGGGGTTGAGGGAGGCGGTGCAGAGGAGCAGGTCTGTGGGCTGGGGCTGAGGGTGTTGGCTGGAGGACAGAGTGTTAGTTTGTAACAAGGAGCCTTGCTGAGCCATGGGAAGCTGCTGCTGGGTTTGCTGTGGTTGTGTCTGCTGGGGGGACTGCTGTTGGTCCATGGGGGTGCTCTGCTGCTGCTGGGTCTGAGACTGGAACACTGACACAGTCTGGGGATCACTGGCTGAAGTCTCCATGGAGGACAGGAATGCTAGCTGCTGCTGACTACCCTGGCTAGAGAGAGTGTTGGGAGAGAGGAACAGCGTGGACCCCGTGACCTGCTGCTCATTATCTCTGCTACCACTGGTCAGCACAGTGAGAGTGTTCTGGAGCAGGGCGGCCTGGACCTGGTGCTGCGGGCTGGGGGATTCCGACAGAGGCCTGGGGGACTGGAGGAGCTGCTGTGGGGGGGAGGTGTGGGAGGGCGGCTGGTGGGGGAAGCTGGAGGTCTGGATGTTGAGCAGCTCCCCAGCCTGCTGGAGGAGAGACACAGGCTGCTGCTGGGGATGAGACGAGGAGTGGATCTGGGGCTGGAGGAGCTCAGCCTGGAGCTGCTGCTGAAAGTTCTCCAacacctgctgctgctgctgctgctgttgttgttgttgtaagtgTTGCATGCTGCCTACTGCTTGGTTTTGTTGTTGTAGGTTGCCTAGtacttgttgttgttgctgaAGTTGTTGATCCGGTAGCTGTATGTTTCCTAggacctgctgctgctgttgttgttgaaacTGTTGATGTTGTAATTGTTGCTGTTGTAGGTTCCCCAGTATCTGTTGTTGCTGTTGCAGTTGTTGATCCTGTGGCTGTATTAATAATTGTGGTTGTAGCTGTATGTTGCCAAGGACTTGATGCTGCTGTATCTGCTGtatctgttgttgctgctgtatctgttgttgctgctgtatcTGTTGCATGTTGCCAAGGATCTGCTGTTGTTGCAACTGCTGTTGTGTGGCCAGAGAGCCCTCAGTGCACCCCAGTCTCAGGCTGTTCATGGTGTCCTGTACGTTTTGCTGCAGGGAGTCAGTGGAGGACGCGGGGCTGTACAACACTGAGTTGAGTTGCTGCTGAGCCACTGCTGCCTCTAGGACCTGCTGTACCAGGCTGCTGCCCCCTGCCTGGAGCTCCCTTACTGCCCTCTCCAGCTGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43032 lncRNA downstream 491 35723818 ~ 35724185 (-) True G38046
TU43027 lncRNA downstream 4155 35720235 ~ 35720521 (-) True G38044
TU42993 lncRNA downstream 17916 35647749 ~ 35706760 (-) True G38010
TU42977 lncRNA downstream 107106 35617356 ~ 35617570 (-) True G37996
TU42974 lncRNA downstream 111024 35613444 ~ 35613652 (-) True G37993
TU43040 lncRNA upstream 6241 35732342 ~ 35732680 (-) True G38049
TU43041 lncRNA upstream 8675 35734776 ~ 35734989 (-) True G38050
TU43050 lncRNA upstream 16185 35742286 ~ 35742503 (-) True G38059
TU43124 lncRNA upstream 136724 35862825 ~ 35863462 (-) True G38126
TU43138 lncRNA upstream 162486 35888587 ~ 35891659 (-) True G38139
LOC110532260 mRNA downstream 29900 35434795 ~ 35694776 (-) False LOC110532260
XM_021597707.2 mRNA downstream 408484 35313953 ~ 35316192 (-) True LOC110520384
XM_036973075.1 mRNA downstream 408651 35313953 ~ 35316025 (-) False LOC110520384
XM_036973693.1 mRNA downstream 408740 35313953 ~ 35315936 (-) False LOC110520384
XM_036989454.1 mRNA downstream 437224 35286541 ~ 35287452 (-) True odf3b
XM_021600073.2 mRNA upstream 16549 35742650 ~ 35749548 (-) False LOC110522006
XM_021600080.2 mRNA upstream 16549 35742650 ~ 35749578 (-) False LOC110522006
XM_021600087.2 mRNA upstream 16549 35742650 ~ 35749585 (-) False LOC110522006
XM_036976665.1 mRNA upstream 16549 35742650 ~ 35749598 (-) False LOC110522006
XM_036976657.1 mRNA upstream 16549 35742650 ~ 35749599 (-) True LOC110522006
TU43028 other downstream 2620 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 141068 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 283348 35440918 ~ 35441328 (-) True G37907
TU42180 other downstream 446671 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1343444 34341562 ~ 34381232 (-) True G36196
TU43851 other upstream 643993 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 782437 36508538 ~ 36510829 (-) True G38855
TU45214 other upstream 1990439 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 2399179 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 2461387 38187488 ~ 38191736 (-) True G40768

Expression Profile