RNA id: TU43288


Basic Information

Item Value
RNA id TU43288
length 405
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G38269
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36191163 ~ 36191567 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtattctctttgtcattatgaggtattgtgcatagattgctgaggatattttttatttactacattttagaataaggctggctataaggtaacaaaatgtagaaaaagtcaaggggtctgaatactttccgaacttcagaaagttttcatacctgaattaaaaatggattaaatgtactCTATTTTTTTCTCACCTATCTACACATACTAGGTCCTTGCCAAGGAGAGGATTGGTGCCTTCTAAACACAGAAAGGCAGCCTTGATTCTTCTTCTTTGGGTTTATTGGAGAACTACATGCAAAAATGTGTATTGTCGCCACCAACAGGTGTGAAAAATTCACTAAAGAAAAGTAAATTCCACTGTCTACAGGAAAGATCAAATTAACATTATTCCACACAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43246 lncRNA downstream 82291 36108398 ~ 36108872 (-) True G38229
TU43241 lncRNA downstream 83266 36106604 ~ 36107897 (-) True G38224
TU43145 lncRNA downstream 145967 36005053 ~ 36045196 (-) True LOC110522092
TU43117 lncRNA downstream 247896 35942686 ~ 35943267 (-) True G38119
TU43150 lncRNA downstream 248559 35942360 ~ 35942604 (-) True G38147
TU43239 lncRNA upstream 35135 36226702 ~ 36231191 (-) True G38223
TU43339 lncRNA upstream 88781 36280348 ~ 36281267 (-) True G38314
TU43354 lncRNA upstream 99288 36290855 ~ 36291393 (-) True LOC110522167
TU43375 lncRNA upstream 140592 36332159 ~ 36333002 (-) True G38345
TU43399 lncRNA upstream 170119 36361686 ~ 36361956 (-) True G38369
XM_036976806.1 mRNA downstream 1457 36141051 ~ 36189706 (-) True LOC110522050
XM_036976802.1 mRNA downstream 1459 36141051 ~ 36189704 (-) False LOC110522050
LOC110522098 mRNA downstream 59782 36121670 ~ 36131381 (-) True LOC110522098
XM_021600311.2 mRNA downstream 70174 36119271 ~ 36120989 (-) True tmem60
XM_036989478.1 mRNA downstream 110734 36074950 ~ 36080429 (-) True LOC110532269
XM_021600252.2 mRNA upstream 39920 36231487 ~ 36234308 (-) True LOC110522124
XM_021600184.2 mRNA upstream 69621 36261188 ~ 36264106 (-) True LOC110522087
XM_021600332.2 mRNA upstream 99139 36290706 ~ 36322273 (-) False LOC110522167
XM_021600322.2 mRNA upstream 99139 36290706 ~ 36322274 (-) False LOC110522167
XM_036976868.1 mRNA upstream 99139 36290706 ~ 36322277 (-) False LOC110522167
TU43028 other downstream 469107 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 607555 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 749835 35440918 ~ 35441328 (-) True G37907
TU42180 other downstream 913158 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1809931 34341562 ~ 34381232 (-) True G36196
TU43851 other upstream 178527 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 316971 36508538 ~ 36510829 (-) True G38855
TU45214 other upstream 1524973 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 1933713 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 1995921 38187488 ~ 38191736 (-) True G40768

Expression Profile