RNA id: TCONS_00027345


Basic Information

Item Value
RNA id TCONS_00027345
length 924
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id XLOC_013445
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25180539 ~ 25225436 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGCTCCCGTGATGATGATATGATGATGCATCGCCGGTGAGTTTAATCAAAGAGTTTGGTTTCATGAACTACTGGAGGAGCAAATAGCAAGCGGCTCTCTTCAGCAGCAGCAGCCTCTTGTCCAGTTTGCTGTTAACAGTGAAGAGGTCCCGTAATGTTACCAAGCACCAGTCAGATCCTCATGCAAAATGCATGGACCATATGGAAGATTGTCAGGGGGTTTCTTATACTGTGAAGATGTCTTTTCCCCTCTAGCAACTTACTTTAATGCATGTTTTGCATCTACTAATGGATGCTAACATGTCAAGGGTCTGCCTGAAACATtgatgtaatgtttttatttttatttatttatttattttttaagtggaTTAGATTTGTGTGCATAAAAAACTGCATGGTGAATCTAAATACACATATAGCCATCCATTTAACAGCTGAAAAACTGCAAAACACTTGTCTACAATGCGTAAATGTCCATGATCTAACCTGGCATTGTTATAACTTgacattacataaaataaatgctctATCATATTTTTGTGCTGTAGAGACATTATTTGTGCAGTGTGAGTGGAGTGTTGGTTAGTTTAGCAAATCTTCTGCAGTATCCGATTGAGATTTAGTGTCTTTGCTTTTTTCTGTTCACAACAGTGCTGAAATATCGACCTCATGGGAAACATACCACTTGTTCCATAAGCATTAAATAGTGTTTAAGACCATTGATGTCATCGCTGCAATCAATGCCAAGCATTGATTTTTTCTTTGAATTTTCCCCCGTTGTGAATGTGAATACAATTTATACCAGTaactgtttccactgtcaatccCTAAACCTATGAATAAAATCTCTACAGAGCGATAGCAGTAGTCATGTTTATATTTGGtctattttaaaattgttttcacCATTTAGACTAGTA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006348 chromatin silencing at telomere biological_process
GO:0046907 intracellular transport biological_process
GO:0034613 cellular protein localization biological_process
GO:0051641 cellular localization biological_process
GO:0051649 establishment of localization in cell biological_process
GO:0070727 cellular macromolecule localization biological_process
GO:0008104 protein localization biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0000407 phagophore assembly site cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043227 membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027342 lncRNA downstream 183469 24990268 ~ 24997070 (-) False XLOC_013441
TCONS_00026535 lncRNA downstream 183804 24990268 ~ 24996735 (-) False XLOC_013441
TCONS_00026537 lncRNA downstream 183905 24990268 ~ 24996634 (-) False XLOC_013441
TCONS_00026531 lncRNA downstream 434138 24741499 ~ 24746401 (-) False XLOC_013439
TCONS_00026553 lncRNA upstream 370803 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027346 lncRNA upstream 471839 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026556 lncRNA upstream 534624 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00026564 lncRNA upstream 1070729 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00027347 lncRNA upstream 1070729 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00026540 mRNA downstream 3309 25073984 ~ 25177230 (-) True XLOC_013443
TCONS_00026539 mRNA downstream 128693 25027495 ~ 25051846 (-) True XLOC_013442
TCONS_00026538 mRNA downstream 183905 24996019 ~ 24996634 (-) True XLOC_013441
TCONS_00026533 mRNA downstream 191878 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026543 mRNA upstream 4198 25229634 ~ 25279323 (-) False XLOC_013446
TCONS_00026544 mRNA upstream 20105 25245541 ~ 25276932 (-) False XLOC_013446
TCONS_00026545 mRNA upstream 30241 25255677 ~ 25276262 (-) True XLOC_013446
TCONS_00026546 mRNA upstream 165735 25391171 ~ 25401002 (-) False XLOC_013447
TCONS_00026547 mRNA upstream 165735 25391171 ~ 25402715 (-) True XLOC_013447
TCONS_00026541 other downstream 21762 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026536 other downstream 183892 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026529 other downstream 620142 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 703656 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026526 other downstream 864240 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026548 other upstream 290457 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026554 other upstream 529402 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 629574 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026563 other upstream 977867 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026577 other upstream 1655036 26880472 ~ 26894703 (-) False XLOC_013464

Expression Profile

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