RNA id: TCONS_00026544


Basic Information

Item Value
RNA id TCONS_00026544
length 1740
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_013446
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25229634 ~ 25279323 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCAATACAAACACAGATTTATGTCATTCAGAAAGAGATTTTGAAATCATGAAAGGATTGCCAGTGCTCATACCTGTAGGTGCAGTTGTTTCAGTCTTTCTGTGATTTGTTGATGACAGCTTTATCTTGAGTATAACCTACTAAGTTTTCTGAGATTACTAGACTTAAACATGGTCTAGTGAGCAGCAGCACTCATGATCTAATAATTCTGTCACGAGATATTTGTGTACATGTGGGATTAGACtagctgaagttttttttccaCGTATTTCAGCAGCTCATTGAAGACTATTGGAGATGGCGTCTGAGAAAAAGGACACCGGTGAAGTTTTGAAGGATCAGAATGTATTTTTTCGAATCCTCAATATTCGGTCTGTCAATGCTGCTCTGGAATCTATTGAGAAGACGTACACTAGTACGAAGCAGTCTCACCCCATTATAAGCTCTGTTTGTGGCCTGTATGAGAAGGGTGTGAGTAGGGCTGGAAATCTGGCTGTGTGGAGCATGAAACCTGCCCTCCATGTGCTACAACCCCAGCTTGTAGCAGCAAACTCAATGGCCTGCAAAGGACTGGACCGACTGGAAGAGAAGGTACCAGCATTGCAATCTCCACCTGCAGAGCTGGCAGCAAAcataaaggggctaatgtctTCAACCCTGGAAGCCGCCAAGGATGGGATCACCTGTCCAATCAAACACAGCTCTAATGTTGTTCTGGACAAGGTTTCTTCAAGGTACCAGCAGAGTAAGAACACTCTCAGTGGCGGCATACAGTACATCCTGAACAGCAAGCTTGTCTTCTTGGCTGAACAGAGAGCCAGCAGGGCTCTAAGTCTAACAGAAAACCTGATCGACTGCATCCTTCCTGGAACTTCAGACAAGACAGAGAATGATAGGAGTACAGAAGAGCAACAGGAGTCTTATGTTGGAGCTTCTGACCCTATGCCGATCTTCAGCAGGCTTGGAGCTCTGGCAAGCACCATCTGCAGACGTGCCTTTGAAAAGACATTTGCACAGCTCCAGCTATCCACACACCAGGGTCACACACTGGTCAAGCGGATCCCTGGCCTGAATCCTCTGGTTGAATTTACCATGAGTACTATGAGGACCATGGGAGGTATAATAAAAGGATTCCCAAGCTCAATGGCAACGTATTTGAAAGATGGCCAACAGCACAGTCCTCTAAAGGAGATGGCCAATGATGAGCATGGGCAAGTCAAGAGTAATGGGCTGGTCAGTGGATTAGGGCAGCGGTTATTGAAAGTCTATGGATCTGTGGTGGCTAATATAAAGAAAACCTCTCGAACCAGCTTCAATCTGGCTAAAGATGGAGTGAACATTGTCCTGGGCTCCTTCGGCACAGTCAGAGAGAAAACACTCCACAAGCTTTCTTATTATGGGCTGGTGAGTGAGTCAGTCATTTGATTTAGGCCCTCACGTGCTTTGATGCATCTGGAATCTAATGCACGTGGACTCTTCACATGTGAATGCATACagacacaaccacacacacacttacacctcAGCCTCATCACCACTCCTGCTATGATGACACACTTCAGCAGGAGATTTCCTTCATAGGTTCTGTCTAGACTAGAGAGCATCATTTGATTCTTTTAATAAATGGTGACCGTTCTTCACAACGCTTTAAGATcactttaatattgaaacaattaagAAAAGGGTTAATTTACACATCAAAATGCACTTGAATACatgacaaaacattttaaaatgtg

Function

GO:

id name namespace
GO:0010890 positive regulation of sequestering of triglyceride biological_process
GO:0019915 lipid storage biological_process
GO:0005811 lipid droplet cellular_component
GO:0005829 cytosol cellular_component

KEGG:

id description
ko04371 Apelin signaling pathway
ko04923 Regulation of lipolysis in adipocytes
ko03320 PPAR signaling pathway
ko04714 Thermogenesis

ZFIN:

id description
ZDB-GENE-050419-213 Predicted to be involved in lipid storage and positive regulation of sequestering of triglyceride. Predicted to be active in cytosol and lipid droplet. Human ortholog(s) of this gene implicated in familial partial lipodystrophy type 4 and obesity. Orthologous to human PLIN1 (perilipin 1).

Ensembl:

ensembl_id ENSDART00000076183

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027345 lncRNA downstream 20105 25180539 ~ 25225436 (-) True XLOC_013445
TCONS_00027344 lncRNA downstream 20154 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026542 lncRNA downstream 20154 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00027343 lncRNA downstream 55931 25180539 ~ 25189610 (-) False XLOC_013445
TCONS_00027342 lncRNA downstream 248471 24990268 ~ 24997070 (-) False XLOC_013441
TCONS_00026553 lncRNA upstream 319307 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027346 lncRNA upstream 420343 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026556 lncRNA upstream 483128 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00026564 lncRNA upstream 1019233 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00027347 lncRNA upstream 1019233 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00026540 mRNA downstream 68311 25073984 ~ 25177230 (-) True XLOC_013443
TCONS_00026539 mRNA downstream 193695 25027495 ~ 25051846 (-) True XLOC_013442
TCONS_00026538 mRNA downstream 248907 24996019 ~ 24996634 (-) True XLOC_013441
TCONS_00026533 mRNA downstream 256880 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026546 mRNA upstream 114239 25391171 ~ 25401002 (-) False XLOC_013447
TCONS_00026547 mRNA upstream 114239 25391171 ~ 25402715 (-) True XLOC_013447
TCONS_00026549 mRNA upstream 286360 25563292 ~ 25568994 (-) False XLOC_013449
TCONS_00026551 mRNA upstream 286360 25563292 ~ 25646286 (-) False XLOC_013449
TCONS_00026550 mRNA upstream 286360 25563292 ~ 25646286 (-) False XLOC_013449
TCONS_00026541 other downstream 86764 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026536 other downstream 248894 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026529 other downstream 685144 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 768658 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026526 other downstream 929242 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026548 other upstream 238961 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026554 other upstream 477906 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 578078 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026563 other upstream 926371 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026577 other upstream 1603540 26880472 ~ 26894703 (-) False XLOC_013464

Expression Profile

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