RNA id: TU44076


Basic Information

Item Value
RNA id TU44076
length 1455
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G38992
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36704524 ~ 36710705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTTGTTTGCATTAGTGcataaagaggaagaggaagtagAAATGATGTGGACTGGAGCAGAGACCATTCCACTTGGTGCCTTGGAACACAAGCGTGTACATTTAAATAAGCATTTCGGATTATTCTCAAGTAAAAAcaaatctcaattgcatacaAGCATTTTTGTTGAACAATGTCTATTTTCAAAACGAGCCTCACAACACACAGAACTATGTGGCTGCTTGCAAAACAGTAAACACATAAATATATTCAGCAAGGCTAAATGAGACCGAAATAGCAAATTCATCAAAAGAAGACGACTTACTGCAAAAACATCCagacaaacatacagtgcattggggtattgtgtgtagatttatgaggggaaaatataatttcatccatttttagaataaggctgtaacataacaaaatgtggaaaaagtcaaggggtctgaatactttcccgaatgcactgtacatatagcTGACAAAACAGAAAGTGATTCTGTCTTTTAAAAATACCAGTTGGTCAATAGGTTTTCTTTGCAGTCACTACTACATCATGATGATCGAAACAGGAAATACAACTATCAAATGGTTCAGAATTATGGACAATTTCTCTCCTTTTATGCATACTTTACCAAACAATTTCATACATATCAAATCAAGTATTATTCATGAAAAACAAAGCACATTGTTTGCAGAATTCATTCACTGGTATCATCACAATCCAATTCCATGTATTCAATACACACGCTGTTCTGCTCATAGGTTTGTAGATTTTCCATTGGCAAGCAGAAACACAATCCCCAATAGATCTAAGGACAGGTGAATACAGTGGAGGAACACAACTGAATTTATAGGCGTCAGCCCTCACCAAACCAAAGGTGTGTAATATTGGAGATGACTTGTCTCATGAGTACTTAGAAGGAACTGAACTTCATTTTCTGCATCTCTGCATGTTGTAAACAACCATACATCTTAGGCTGTCCGCATTGCGTAGATCTTTCCCTATATTGTACCGGATTTACTATAAATAAAACCCTTGACTATTTTGTGCAGTAGTATTAACTGATTACCAGAAACAGGGAACACATTGCAACCTGTTCTCTTCTGATGAAAACAATGTGTTGACATTCTGTGAACAAAACACttaacagcaacaacaaaaaaatttaTGACAGTTGTACAAAggtacaaaaacaagaaaatgatcaGACAATCTACAAATGCATTTGATCATTGTTGTTTTGCTATACGGACATTTAACCACAGTTCCAAAAAAATGCTTGATTGAGAAAAACTATAAGAGCATTATTCAACCCAGTAAAAAAGTATTTGCTCAATTGACTCTCATGTAGTCACTGACAAAAATGATCAGACTTTTTCTCCTTGGTTTAGATAACATCATAACATCTCTGAATCAGGCTGTCCCTAGTCTTCCATGTCCCcgactctctccccttctctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43997 lncRNA downstream 128346 36575041 ~ 36576178 (-) True G38917
TU43951 lncRNA downstream 202077 36494119 ~ 36502447 (-) True G38875
TU43958 lncRNA downstream 205324 36498720 ~ 36499200 (-) False G38881
TU43959 lncRNA downstream 205324 36498720 ~ 36499200 (-) True G38881
TU43404 lncRNA downstream 341176 36363147 ~ 36363348 (-) True G38374
TU44114 lncRNA upstream 51528 36762233 ~ 36789206 (-) True G39030
TU44120 lncRNA upstream 240215 36950920 ~ 36952635 (-) False trim44
TU44122 lncRNA upstream 240215 36950920 ~ 36952635 (-) True trim44
TU44259 lncRNA upstream 259743 36970448 ~ 36970664 (-) True G39158
TU44295 lncRNA upstream 289442 37000147 ~ 37000468 (-) True G39194
XR_005053627.1 mRNA downstream 63415 36641055 ~ 36641109 (-) True LOC118966750
XM_021600499.2 mRNA downstream 154522 36539797 ~ 36550002 (-) True LOC100750228
XM_036976888.1 mRNA downstream 295460 36370091 ~ 36409064 (-) False LOC110522187
XM_036976896.1 mRNA downstream 317033 36370091 ~ 36387491 (-) False LOC110522187
XM_036976868.1 mRNA downstream 382247 36290706 ~ 36322277 (-) False LOC110522167
XM_021600535.2 mRNA upstream 2159 36712864 ~ 36827281 (-) True ldlrad3
XM_021600554.2 mRNA upstream 173767 36884472 ~ 36952966 (-) False trim44
XM_021600601.2 mRNA upstream 173767 36884472 ~ 36952968 (-) False trim44
XM_021600563.2 mRNA upstream 173767 36884472 ~ 36952969 (-) False trim44
XM_021600572.2 mRNA upstream 173767 36884472 ~ 36952970 (-) False trim44
TU43930 other downstream 193695 36508538 ~ 36510829 (-) True G38855
TU43851 other downstream 295505 36370094 ~ 36409019 (-) True LOC110522187
TU43028 other downstream 982468 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 1120916 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 1263196 35440918 ~ 35441328 (-) True G37907
TU45214 other upstream 1005835 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 1414575 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 1476783 38187488 ~ 38191736 (-) True G40768
TU47067 other upstream 2311100 39021805 ~ 39022025 (-) True G41868
TU52237 other upstream 6328023 43038728 ~ 43129029 (-) True tspan9a

Expression Profile