RNA id: TCONS_00026548


Basic Information

Item Value
RNA id TCONS_00026548
length 235
RNA type processed_transcript
GC content 0.42
exon number 2
gene id XLOC_013448
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25515893 ~ 25516631 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCTCCGCTAAAACGAAACCTCCGCCAAAATTGAGCAAAAGAAAGTGCACAACAGTTAAAAAACCATCATCAAGTCCCGGAGTGGCAGCCGgtttttcaCCTTTCAACTTTCTACTTTCTACTTTTTACCTGCCTTTGATGCAATAAATGGATGAGTGGAATCCAGTCCAAACTCCCTTGATGATGTGTCTTCCTTTCAAGCGGGAAACTTGTGCATAAGAGAAAAGCTTgaca

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142239

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027345 lncRNA downstream 290457 25180539 ~ 25225436 (-) True XLOC_013445
TCONS_00027344 lncRNA downstream 290506 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026542 lncRNA downstream 290506 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00027343 lncRNA downstream 326283 25180539 ~ 25189610 (-) False XLOC_013445
TCONS_00027342 lncRNA downstream 518823 24990268 ~ 24997070 (-) False XLOC_013441
TCONS_00026553 lncRNA upstream 79608 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027346 lncRNA upstream 180644 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026556 lncRNA upstream 243429 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00026564 lncRNA upstream 779534 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00027347 lncRNA upstream 779534 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00026547 mRNA downstream 113178 25391171 ~ 25402715 (-) True XLOC_013447
TCONS_00026546 mRNA downstream 114891 25391171 ~ 25401002 (-) False XLOC_013447
TCONS_00026543 mRNA downstream 236570 25229634 ~ 25279323 (-) False XLOC_013446
TCONS_00026544 mRNA downstream 238961 25245541 ~ 25276932 (-) False XLOC_013446
TCONS_00026545 mRNA downstream 239631 25255677 ~ 25276262 (-) True XLOC_013446
TCONS_00026549 mRNA upstream 46661 25563292 ~ 25568994 (-) False XLOC_013449
TCONS_00026551 mRNA upstream 46661 25563292 ~ 25646286 (-) False XLOC_013449
TCONS_00026550 mRNA upstream 46661 25563292 ~ 25646286 (-) False XLOC_013449
TCONS_00026552 mRNA upstream 55591 25572222 ~ 25645680 (-) False XLOC_013449
TCONS_00026555 mRNA upstream 238207 25754838 ~ 25771553 (-) False XLOC_013451
TCONS_00026541 other downstream 357116 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026536 other downstream 519246 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026529 other downstream 955496 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 1039010 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026525 other downstream 1039779 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026554 other upstream 238207 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 338379 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026563 other upstream 686672 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026577 other upstream 1363841 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026581 other upstream 1620234 27136865 ~ 27136982 (-) True XLOC_013468

Expression Profile

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