RNA id: TCONS_00026549


Basic Information

Item Value
RNA id TCONS_00026549
length 563
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_013449
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25563292 ~ 25646286 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCACAAACACCCCAGAACTGAACCGGAAATCTGCACGGACCAGCAGCTCGCAAACGGCCAGCACAAAAAGAAGAAGTCCAAGAAGCATAAAGAAAAGGAGAGGGAACGTTTAAAACCCGAGTGGGTCGAGACCAGTCCTGACCTCAAACACAACCAGGAGAATATTAATGaTCACGAACGGCCCAACACACCTGTCACCCGCGCCTCGCCTGATCAGCTGCCCGACTATTTATTAAaatacaacactattacagactcTGAGCAGCGGCAAAGATACAAAGAGGATTTCTGTGCAGAGTACGATGAGTACAGAGACCTTCATGAGCGCATTGGGAAAGTCACAGAGATATTTGTCCAGCTCGGATCCAAGATAAAAACACTGTCACCTGGCACACAGGAGTACAAGGTTATGGAAGATCAAATAATGGAGAAGTATAAGAAGTATAAGAAGAAGTTTCCAGGCTACCGGGAAGAGAAGAAGCGTTGTGAATATCTTCATCAGAAACTGTCGCACATCAAAGGCCTGATTCTGGACTATGACCAAACACAATTGCCATCCTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000133029

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027345 lncRNA downstream 337856 25180539 ~ 25225436 (-) True XLOC_013445
TCONS_00027344 lncRNA downstream 337905 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026542 lncRNA downstream 337905 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00027343 lncRNA downstream 373682 25180539 ~ 25189610 (-) False XLOC_013445
TCONS_00027342 lncRNA downstream 566222 24990268 ~ 24997070 (-) False XLOC_013441
TCONS_00026553 lncRNA upstream 27245 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027346 lncRNA upstream 128281 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026556 lncRNA upstream 191066 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00026564 lncRNA upstream 727171 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00027347 lncRNA upstream 727171 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00026547 mRNA downstream 160577 25391171 ~ 25402715 (-) True XLOC_013447
TCONS_00026546 mRNA downstream 162290 25391171 ~ 25401002 (-) False XLOC_013447
TCONS_00026543 mRNA downstream 283969 25229634 ~ 25279323 (-) False XLOC_013446
TCONS_00026544 mRNA downstream 286360 25245541 ~ 25276932 (-) False XLOC_013446
TCONS_00026545 mRNA downstream 287030 25255677 ~ 25276262 (-) True XLOC_013446
TCONS_00026552 mRNA upstream 3228 25572222 ~ 25645680 (-) False XLOC_013449
TCONS_00026555 mRNA upstream 185844 25754838 ~ 25771553 (-) False XLOC_013451
TCONS_00026557 mRNA upstream 214452 25783446 ~ 25855263 (-) False XLOC_013452
TCONS_00026558 mRNA upstream 214452 25783446 ~ 25905574 (-) False XLOC_013452
TCONS_00026559 mRNA upstream 214452 25783446 ~ 25905623 (-) False XLOC_013452
TCONS_00026548 other downstream 46661 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026541 other downstream 404515 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026536 other downstream 566645 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026529 other downstream 1002895 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 1086409 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026554 other upstream 185844 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 286016 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026563 other upstream 634309 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026577 other upstream 1311478 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026581 other upstream 1567871 27136865 ~ 27136982 (-) True XLOC_013468

Expression Profile

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