RNA id: TCONS_00026551


Basic Information

Item Value
RNA id TCONS_00026551
length 2340
RNA type mRNA
GC content 0.45
exon number 11
gene id XLOC_013449
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25563292 ~ 25646286 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCcaaccaatgccaagaagcctatattaatcatatagctcttctattatttttttttattatgttgtaAAATATGTCTATAGCCATTAAGATTTTGCCTGTATTACTAATTTTTACTAAAACCTGGGGCCTCCATGAATAGTAGAACATTTAGCTATTTCatactgcacatgcaaatattaaaatctaatcacgAATATGGCTAATTAACTGTACATATAGTTAGTTTGTGAAGTTGTTAATTGTacttaattttacattaattttattttttttaaaaaacaacaacaaaaaacgaatctacagaggaaaaaaaatatctgtatataGAAAGAGAGTTTTAATGTTAGGGCTTCATACATGGAAtagcttagggcccccaaattaCTAAGTCCGCCCCTGTAAATACAGGGGTGATATCACCATAATATAAAAAAGCGGAGATGTTAGTTCAGTAGGTTTATTAGTGAAATGCACATGTACATtgagtgtgtgcgcgcgtgtttgtgtgtgtgtctatgacgTCGCCACAACGCTGTCTCGTAGCCCCGCCCGGCAGAGAGTGACGTTTGGACGAGAATGTCGCCAGTTCACCTCAGTTCCAGACATGGCAGCGTTGAGACAGGAGCATCGGTATGGACTCTCCTGTGGAAAGATTAATAAAAGCATTCCCAACAAAACCATCTTTCACGTCAAACTAACCGACACGGCCATCCGGACGCTGGAAGCCTATCAGAATCTTAAGTATATCAAGATTCCAGCGTCCTCTGATTCTCCTGATGCTTTCCGTGTGTTCTCCTTCTACCTGTCCAGCGACAGTAAAGACAAACCTCAGGCCAGCTTTGATTGTGTTCACCAGTTTGTTTCGGGAGATGGCAGGGATCGTCTGGAAGGTCAGGGCAGTATTCAGGATAAAATCACAGTGTGTGCCACCGACGATTCCTACCAGATGACCCGCGAGCGCATGTCTCAAGTGGAAAAGGACATCTGGAGTCGCTCAGCCATCGAAATCAAACCTGGATCTACACGTCCAAGTAAATGTGTGAAGATTAAGAAGAAACAGAGTCTTTCAGCAagttttgacagcactaataaacaTTCACCGAGCAACAAGAGGAACGGTGGTCCCAGCCTGGTGACTCACAGGCCCTTGAGGGAGAGAGTTATTCACATATTGGCCTTAAAGCCTTACAGCAAACCTGAACTATTGCTCTGGCTGGAGAGGGAGAAAGCAAGCCCCAAGGACAAGGCCGACTTGAGCCCTGTGCTGGATGAGGTGGCGAAACTCAATCCCAAAGAACACAGCTTTACTCTGAAGGATGATTTCTACAGACATGTGCGGAAAGACTGGCCAGGCTATGTAGAGGAAGAGCGGCAACTCATTCAGAGGGTGTTAGCAAGAAAGCTCCAGCcgctcagcagcagcagcagcagtagccAGTTGAAAAGCTTCCAGTCCAGCCATTCATTCCACAAAACCTCAGGGGATTCTCCATCCCAACTCAGCCCTGTCAAGACTCCCTCCATGAAACGCCCAGTGCCTTCCGACCATCCAGAAAGTCAGACGCCGAAAAAGCAACGTTTATTAGAGCAGAACATCCCCTTACAGTCTCCTTCCAATGGACATCTCAGCTCGTCTGTGGGCCGCAGCTCTTCCTCTCATGGAAACACAAGTTTGCAGAGAGGTCCGAACACAGATGAGTTTTACCAGAGGCACAAGCTCAACGAGGGCAACAGTTTGCCCAAAACTGAGCAGCCCGAACCAGCAGCGTCCAGCCCCCACAAACACCCCAGAACTGAACCGGAAATCTGCACGGACCAGCAGCTCGCAAACGGCCAGCACAAAAAGAAGAAGTCCAAGAAGCATAAAGAAAAGGAGAGGGAACGTTTAAAACCCGAGTGGGTCGAGACCAGTCCTGACCTCAAACACAACCAGGAGAATATTAATGaTCACGAACGGCCCAACACACCTGTCACCCGCGCCTCGCCTGATCAGCTGCCCGACTATTTATTAAaatacaacactattacagactcTGAGCAGCGGCAAAGATACAAAGAGGATTTCTGTGCAGAGTACGATGAGTACAGAGACCTTCATGAGCGCATTGGGAAAGTCACAGAGATATTTGTCCAGCTCGGATCCAAGATAAAAACACTGTCACCTGGCACACAGGAGTACAAGGTTATGGAAGATCAAATAATGGAGAAGTATAAGAAGTATAAGAAGAAGTTTCCAGGCTACCGGGAAGAGAAGAAGCGTTGTGAATATCTTCATCAGAAACTGTCGCACATCAAAGGCCTGATTCTGGACTATGACCAAACACAATTGCCATCCTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000186890

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027345 lncRNA downstream 337856 25180539 ~ 25225436 (-) True XLOC_013445
TCONS_00027344 lncRNA downstream 337905 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026542 lncRNA downstream 337905 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00027343 lncRNA downstream 373682 25180539 ~ 25189610 (-) False XLOC_013445
TCONS_00027342 lncRNA downstream 566222 24990268 ~ 24997070 (-) False XLOC_013441
TCONS_00027346 lncRNA upstream 50989 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026556 lncRNA upstream 113774 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00026564 lncRNA upstream 649879 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00027347 lncRNA upstream 649879 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00027348 lncRNA upstream 1408560 27054846 ~ 27066350 (-) True XLOC_013467
TCONS_00026547 mRNA downstream 160577 25391171 ~ 25402715 (-) True XLOC_013447
TCONS_00026546 mRNA downstream 162290 25391171 ~ 25401002 (-) False XLOC_013447
TCONS_00026543 mRNA downstream 283969 25229634 ~ 25279323 (-) False XLOC_013446
TCONS_00026555 mRNA upstream 108552 25754838 ~ 25771553 (-) False XLOC_013451
TCONS_00026557 mRNA upstream 137160 25783446 ~ 25855263 (-) False XLOC_013452
TCONS_00026558 mRNA upstream 137160 25783446 ~ 25905574 (-) False XLOC_013452
TCONS_00026559 mRNA upstream 137160 25783446 ~ 25905623 (-) False XLOC_013452
TCONS_00026561 mRNA upstream 450528 26096814 ~ 26101800 (-) True XLOC_013453
TCONS_00026548 other downstream 46661 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026541 other downstream 404515 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026536 other downstream 566645 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026529 other downstream 1002895 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 1086409 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026554 other upstream 108552 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 208724 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026563 other upstream 557017 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026577 other upstream 1234186 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026581 other upstream 1490579 27136865 ~ 27136982 (-) True XLOC_013468

Expression Profile

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