RNA id: TU44981


Basic Information

Item Value
RNA id TU44981
length 543
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G39849
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 37525861 ~ 37526403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctctgtcccagtctcaggtcttttgcagactccatcaggttatcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtattcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtgactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44979 lncRNA downstream 1272 37524369 ~ 37524589 (-) True G39847
TU44977 lncRNA downstream 2144 37523458 ~ 37523717 (-) True G39845
TU44975 lncRNA downstream 3151 37522462 ~ 37522710 (-) True G39843
TU44943 lncRNA downstream 26585 37498848 ~ 37499276 (-) True G39812
TU44904 lncRNA downstream 54334 37471314 ~ 37471527 (-) True G39773
TU44988 lncRNA upstream 6149 37532552 ~ 37532997 (-) True G39856
TU44989 lncRNA upstream 7433 37533836 ~ 37534058 (-) True G39857
TU45036 lncRNA upstream 45119 37571522 ~ 37571860 (-) True G39904
TU45180 lncRNA upstream 147252 37673655 ~ 37673906 (-) False LOC118966683
TU45181 lncRNA upstream 147509 37673912 ~ 37674287 (-) True LOC118966683
XM_021600689.2 mRNA downstream 128227 37380568 ~ 37397634 (-) False LOC110522348
XM_021600697.2 mRNA downstream 128227 37380568 ~ 37397634 (-) True LOC110522348
XM_021600666.2 mRNA downstream 178218 37287556 ~ 37347643 (-) False pdhx
XM_021600676.2 mRNA downstream 178218 37287556 ~ 37347643 (-) True pdhx
XM_036977062.1 mRNA downstream 183786 37287556 ~ 37342075 (-) False pdhx
XM_036989487.1 mRNA upstream 144446 37670849 ~ 37675533 (-) False LOC118966683
XM_036989498.1 mRNA upstream 149978 37676381 ~ 37681639 (-) True LOC118966685
XM_036989509.1 mRNA upstream 156241 37682644 ~ 37687745 (-) True LOC118966688
XM_036989519.1 mRNA upstream 162347 37688750 ~ 37693851 (-) True LOC118966689
XR_005051686.1 mRNA upstream 534686 38061089 ~ 38061663 (-) True LOC118964577
TU43930 other downstream 1015032 36508538 ~ 36510829 (-) True G38855
TU43851 other downstream 1116842 36370094 ~ 36409019 (-) True LOC110522187
TU43028 other downstream 1803805 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 1942253 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 2084533 35440918 ~ 35441328 (-) True G37907
TU45214 other upstream 190137 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 598877 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 661085 38187488 ~ 38191736 (-) True G40768
TU47067 other upstream 1495402 39021805 ~ 39022025 (-) True G41868
TU52237 other upstream 5512325 43038728 ~ 43129029 (-) True tspan9a

Expression Profile