RNA id: TCONS_00026552


Basic Information

Item Value
RNA id TCONS_00026552
length 923
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_013449
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25563292 ~ 25646286 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAGCGTTGAGACAGGAGCATCGGTATGGACTCTCCTGTGGAAAGATTAATAAAAGCATTCCCAACAAAACCATCTTTCACGTCAAACTAACCGACACGGCCATCCGGACGCTGGAAGCCTATCAGAATCTTAAGGGGTCCTTACCAAATCAGCCGGCAATTTGCTTCAAGGGGAACCAGGGGTATATCAAGATTCCAGCGTCCTCTGATTCTCCTGATGCTTTCCGTGTGTTCTCCTTCTACCTGTCCAGCGACAGTAAAGACAAACCTCAGGCCAGCTTTGATTGTGTTCACCAGTTTGTTTCGGGAGATGGCAGGGATCGTCTGGAAGGTCAGGGCAGTATTCAGGATAAAATCACAGTGTGTGCCACCGACGATTCCTACCAGATGACCCGCGAGCGCATGTCTCAAGTGGAAAAGGACATCTGGAGTCGCTCAGCCATCGAAATCAAACCTGGATCTACACGTCCAAGTAAATGTGTGAAGATTAAGAAGAAACAGAGTCTTTCAGCAagttttgacagcactaataaacaTTCACCGAGCAACAAGAGGAACGGTGGTCCCAGCCTGGTGACTCACAGGCCCTTGAGGGAGAGAGTTATTCACATATTGGCCTTAAAGCCTTACAGCAAACCTGAACTATTGCTCTGGCTGGAGAGGGAGAAAGCAAGCCCCAAGGACAAGGCCGACTTGAGCCCTGTGCTGGATGAGGTGGCGAAACTCAATCCCAAAGAACACAGCTTTACTCTGAAGGATGATTTCTACAGACATGTGCGGAAAGACTGGCCAGGCTATGTAGAGGAAGAGCGGCAACTCATTCAGAGGGTGTTAGCAAGAAAGCTCCAGCcgctcagcagcagcagcagcagtagccAGTTGAAAAGCTTCCAGTCCAGCCATTCATTCCACAAAACCTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000135874

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027345 lncRNA downstream 346786 25180539 ~ 25225436 (-) True XLOC_013445
TCONS_00027344 lncRNA downstream 346835 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026542 lncRNA downstream 346835 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00027343 lncRNA downstream 382612 25180539 ~ 25189610 (-) False XLOC_013445
TCONS_00027342 lncRNA downstream 575152 24990268 ~ 24997070 (-) False XLOC_013441
TCONS_00027346 lncRNA upstream 51595 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026556 lncRNA upstream 114380 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00026564 lncRNA upstream 650485 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00027347 lncRNA upstream 650485 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00027348 lncRNA upstream 1409166 27054846 ~ 27066350 (-) True XLOC_013467
TCONS_00026549 mRNA downstream 3228 25563292 ~ 25568994 (-) False XLOC_013449
TCONS_00026547 mRNA downstream 169507 25391171 ~ 25402715 (-) True XLOC_013447
TCONS_00026546 mRNA downstream 171220 25391171 ~ 25401002 (-) False XLOC_013447
TCONS_00026543 mRNA downstream 292899 25229634 ~ 25279323 (-) False XLOC_013446
TCONS_00026555 mRNA upstream 109158 25754838 ~ 25771553 (-) False XLOC_013451
TCONS_00026557 mRNA upstream 137766 25783446 ~ 25855263 (-) False XLOC_013452
TCONS_00026558 mRNA upstream 137766 25783446 ~ 25905574 (-) False XLOC_013452
TCONS_00026559 mRNA upstream 137766 25783446 ~ 25905623 (-) False XLOC_013452
TCONS_00026561 mRNA upstream 451134 26096814 ~ 26101800 (-) True XLOC_013453
TCONS_00026548 other downstream 55591 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026541 other downstream 413445 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026536 other downstream 575575 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026529 other downstream 1011825 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 1095339 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026554 other upstream 109158 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 209330 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026563 other upstream 557623 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026577 other upstream 1234792 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026581 other upstream 1491185 27136865 ~ 27136982 (-) True XLOC_013468

Expression Profile

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