RNA id: TU45523


Basic Information

Item Value
RNA id TU45523
length 2377
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G40382
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 37846941 ~ 37849317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATATCAAATGATGTTTATTCAGGGAAGCGATTATATGTCAGTGAAAAAAAGTAAATAGTAAACACTTCAAAATGCATAGATGAATTTAATATAATGCAGGATACTGTTTACACATTTTGGTTATCCGAAGCCCATTACCGGTCGCCATTTAACATTTATCCAGAGTGCATGAAGCTTTACAGGCTCTGGAACTCACTTTTTGTgtatctgtacattactattcatatttttaacaacttCAACTtctactttactacattcctagtaaaaatattgtactttttactctacaCATTTTcgctgacacccaaaagtactcattaatAGCAGGACAAGAACATGGTcgaattcacacacttatcaagagaacatccctggtcatccctactgcctctgatctggcagactcactaaatgcaaatgctttgtttgtaaattatgtctgcatTTTTtactgtgcccctggctatctgtaaattgaaaaaaaaagaatTTGTGCcatttggtttgcttaatattagCAATCTGAAAATGTtatgcttttacttttgatacttaaatatattttttaattacatttacttttgattcaTACAGTAagtgtatttaaaaccaaatacttttagacttttacacaATTAGCATTTTATTGGGCGACTTTCACCTTTacgtgagtcattttctatgacgCCATCTTAACTTTTACTTGTCaggcaattgggtacttttcccaccactatTTGAGATACTCTTTAAAGTTTCAGAAGTTATCGGGAGATGGGCAGGGACTTCGCTGTCCTGACATTACGGTGAAAATTGTTCCATCATCGGCATGCTAGGACAGAGAATAGCTTTGACAAGGATGAGCGGGAACTGCCCTTCCAATAGGGTGgcagggccaagagaccagaggtggcagaacagagtgtttcagttggggtgtagggtttgaccaCAGTTCCCATTGCTGCTGCATAGGCAAGCACCAAGGTCTTGAAGATTAtgtgagcttcgactggaagccagtggagtgtgcagaaGAGCGTGGTggcatgggagaacttgggaaggttgaacaccaggcacCAGAGGTTTGAAGGCACAAGTGGGGAGCCCAgtcaacagagagttgcagtagtgTAGACGGGAAATGACAAGTGCCTAGATCAGTACCTGCtctgcttcctgtgtgaggaaagATTATACTCTACGGCTGTTGTAGAGCGTGAACCTGCAGGAGTGAATCACTgcttgatgtttgcagagaatgacagggtgttgtccagggtcacgccaaggttctttgcactctgggagggagACACCCTGGAGTTATCAACTGTGATGGAGATGTCTtggagcgggcaggccttccccaggaggaagagcagcttcatCGTGTTGAGATTGAGCCTGAGGTGGTGGGccaacatccaagctgagatgtcTGCCAAGTATGCAGAGATGTGTCACCACCTGGGTATCAGAAGTGGAGAAGGAGAAAAGAAGTTGAGCACCATCCACATACagtagcaatgataggagagaccatgtgaggatatcaAGAGCTTGGGATTATAAAGGTTCTATCCGCAAAAATATGATTCTGAGAAGGTTGGCGTTCATTTTCGAAACCCTCATTtgtttgaatggtgtcagcaatttttatattgtattattctgaacttaacaacatgaattagggtatttagagtactatataggtaGAGGACATTGAACTgaacaaggctatgtcaatagcaacattttgacaaaaatgcctatagaaccttatagtcccaaacTTTCGATATGACAGAGCTGAGTGCAGACAAAGATCCTCTGTTTGAAGCAAACTTCCAGGTAGAATGCAATACAgcagtgtgcagagcctgagatgtCCCGCCCTGAGAGGATGAAGAGGACAATCTGACTGTTCATGGTGTTGAAGGCAGCAGATAGATCTATGAGGATGAGAACAGATGAGAGAGAGTCATCTTTGACAGAGCGAAGAGCCTCCCTGACAGAGGAGAGTTGTCTCAGTTGAGTGAGCTgccttgaagcctgactggttaaggtcaagaagatcattctcagagagatagcgagagatgTGGCCATAGAcagcacgctcaagtgttttggaaggaaaagaaagaagggatactGATCTGTAGTTTTTGACATCAGAGGGGTTGAGTGTTgttttcttgaggaggggagcaacTGGCCATCTGAAGGTACGCAGCCAATGGTCAGGAATGAGTTGATGTGGGACATGAGGAATGGTAGATGGTCTCCAGATATTGtcaggagaagggaggaggagatggggtcAAGTGGACAGGTTGTCTGGTGGCCGGACATCACTAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45301 lncRNA downstream 65403 37781299 ~ 37781538 (-) True G40166
TU45298 lncRNA downstream 68081 37778555 ~ 37778860 (-) True G40163
TU45295 lncRNA downstream 70171 37776556 ~ 37776770 (-) True G40160
TU45286 lncRNA downstream 75684 37770985 ~ 37771257 (-) True G40151
TU45268 lncRNA downstream 89487 37757196 ~ 37757454 (-) True G40133
TU45546 lncRNA upstream 35161 37884478 ~ 37884724 (-) True G40405
TU45548 lncRNA upstream 37679 37886996 ~ 37887284 (-) True G40407
TU45551 lncRNA upstream 41784 37891101 ~ 37891312 (-) True G40410
TU45554 lncRNA upstream 43535 37892852 ~ 37893231 (-) True G40413
TU45562 lncRNA upstream 51264 37900581 ~ 37900880 (-) True G40421
XM_036989519.1 mRNA downstream 153090 37688750 ~ 37693851 (-) True LOC118966689
XM_036989509.1 mRNA downstream 159196 37682644 ~ 37687745 (-) True LOC118966688
XM_036989498.1 mRNA downstream 165302 37676381 ~ 37681639 (-) True LOC118966685
XM_036989487.1 mRNA downstream 171408 37670849 ~ 37675533 (-) False LOC118966683
XM_021600697.2 mRNA downstream 449307 37380568 ~ 37397634 (-) True LOC110522348
XR_005051686.1 mRNA upstream 211772 38061089 ~ 38061663 (-) True LOC118964577
XR_005051684.1 mRNA upstream 216642 38065959 ~ 38066605 (-) False LOC118964575
LOC110520456 mRNA upstream 1165758 39015075 ~ 39019091 (-) True LOC110520456
XM_021600757.2 mRNA upstream 1231686 39081003 ~ 39084318 (-) True LOC110522389
LOC118966691 mRNA upstream 1251508 39100825 ~ 39115097 (-) True LOC118966691
TU45214 other downstream 129908 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 1336112 36508538 ~ 36510829 (-) True G38855
TU43851 other downstream 1437922 36370094 ~ 36409019 (-) True LOC110522187
TU43028 other downstream 2124885 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 2263333 35583292 ~ 35583608 (-) True G37976
TU45886 other upstream 275963 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 338171 38187488 ~ 38191736 (-) True G40768
TU47067 other upstream 1172488 39021805 ~ 39022025 (-) True G41868
TU52237 other upstream 5189411 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 7871488 45720805 ~ 45721124 (-) True G49774

Expression Profile