RNA id: TCONS_00026553


Basic Information

Item Value
RNA id TCONS_00026553
length 730
lncRNA type retained_intron
GC content 0.41
exon number 4
gene id XLOC_013449
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25563292 ~ 25646286 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGCATCGGTATGGACTCTCCTGTGGAAAGATTAATAAAAGCATTCCCAACAAAACCATCTTTCACGTCAAACTAACCGACACGGCCATCCGGACGCTGGAAGCCTATCAGAATCTTAAGGGGTCCTTACCAAATCAGCCGGCAATTTGCTTCAAGGGGAACCAGGGGTATATCAAGATTCCAGCGTCCTCTGATTCTCCTGATGCTTTCCGTGTGTTCTCCTTCTACCTGTCCAGCGACAGTAAAGACAAACCTCAGGCCAGCTTTGATTGTGTTCACCAGTTTGTTTCGGGAGATGGCAGGGATCGTCTGGAAGGTCAGGGCAGTATTCAGGATAAAATCACAGTGTGTGCCACCGACGATTCCTACCAGATGACCCGCGAGCGCATGTCTCAAGTGGAAAAGGACATCTGGAGTCGCTCAGCCATCGAAATCAAACCTGGATCTACACGTCCAAGTAAGAATCCAGCTCATGTGCACACAAAGAACCACTCCATATGCACAGACACAATTATCTCTCATTAAACATATCAAATAACACTTTTCCCCCAAATAATACCCATGTAATATCATGTCCAAATGATACTCAAGTGAAAGCACAGATAgttgagtaaaagtaaaaaaaaaatgcagttttaataattctctaataataataattaatatgcaaaatattaaaaaaaagttttttttagatgacATTTAgtgctatttttgaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000138861

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027345 lncRNA downstream 370803 25180539 ~ 25225436 (-) True XLOC_013445
TCONS_00027344 lncRNA downstream 370852 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026542 lncRNA downstream 370852 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00027343 lncRNA downstream 406629 25180539 ~ 25189610 (-) False XLOC_013445
TCONS_00027342 lncRNA downstream 599169 24990268 ~ 24997070 (-) False XLOC_013441
TCONS_00027346 lncRNA upstream 51612 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026556 lncRNA upstream 114397 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00026564 lncRNA upstream 650502 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00027347 lncRNA upstream 650502 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00027348 lncRNA upstream 1409183 27054846 ~ 27066350 (-) True XLOC_013467
TCONS_00026549 mRNA downstream 27245 25563292 ~ 25568994 (-) False XLOC_013449
TCONS_00026547 mRNA downstream 193524 25391171 ~ 25402715 (-) True XLOC_013447
TCONS_00026546 mRNA downstream 195237 25391171 ~ 25401002 (-) False XLOC_013447
TCONS_00026543 mRNA downstream 316916 25229634 ~ 25279323 (-) False XLOC_013446
TCONS_00026544 mRNA downstream 319307 25245541 ~ 25276932 (-) False XLOC_013446
TCONS_00026555 mRNA upstream 109175 25754838 ~ 25771553 (-) False XLOC_013451
TCONS_00026557 mRNA upstream 137783 25783446 ~ 25855263 (-) False XLOC_013452
TCONS_00026558 mRNA upstream 137783 25783446 ~ 25905574 (-) False XLOC_013452
TCONS_00026559 mRNA upstream 137783 25783446 ~ 25905623 (-) False XLOC_013452
TCONS_00026561 mRNA upstream 451151 26096814 ~ 26101800 (-) True XLOC_013453
TCONS_00026548 other downstream 79608 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026541 other downstream 437462 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026536 other downstream 599592 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026529 other downstream 1035842 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 1119356 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026554 other upstream 109175 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 209347 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026563 other upstream 557640 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026577 other upstream 1234809 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026581 other upstream 1491202 27136865 ~ 27136982 (-) True XLOC_013468

Expression Profile

//