RNA id: TU45673



Basic Information


Item Value
RNA id TU45673
length 245
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G40531
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 38024756 ~ 38025000 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagatccctcaggagaccatccgccacctcaccaggagcatgcccaggcgttgtagggaggtcatacaggcacgtggaggccacacacattactgagcctcattttgactcgttttaaggacattacatcaaagttggatcagcctgtagtaataatgggaattgatggaaaatgatgtcaaatatatcactagccactttaaacaatgctacctaatataatgtttacataccctacattattc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45672 lncRNA downstream 10 38024185 ~ 38024746 (-) True G40530
TU45660 lncRNA downstream 7918 38016579 ~ 38016838 (-) True G40518
TU45638 lncRNA downstream 24069 38000469 ~ 38000687 (-) True G40496
TU45578 lncRNA downstream 100108 37924402 ~ 37924648 (-) True G40437
TU45562 lncRNA downstream 123876 37900581 ~ 37900880 (-) True G40421
TU45832 lncRNA upstream 32553 38057553 ~ 38057784 (-) True G40679
TU45833 lncRNA upstream 33130 38058130 ~ 38058354 (-) True G40680
TU45836 lncRNA upstream 36165 38061165 ~ 38066299 (-) True G40683
TU45842 lncRNA upstream 41490 38066490 ~ 38066761 (-) True LOC118964575
TU45925 lncRNA upstream 167100 38192100 ~ 38192367 (-) True G40769
XM_036989519.1 mRNA downstream 330905 37688750 ~ 37693851 (-) True LOC118966689
XM_036989509.1 mRNA downstream 337011 37682644 ~ 37687745 (-) True LOC118966688
XM_036989498.1 mRNA downstream 343117 37676381 ~ 37681639 (-) True LOC118966685
XM_036989487.1 mRNA downstream 349223 37670849 ~ 37675533 (-) False LOC118966683
XM_021600697.2 mRNA downstream 627122 37380568 ~ 37397634 (-) True LOC110522348
XR_005051686.1 mRNA upstream 36089 38061089 ~ 38061663 (-) True LOC118964577
XR_005051684.1 mRNA upstream 40959 38065959 ~ 38066605 (-) False LOC118964575
LOC110520456 mRNA upstream 990075 39015075 ~ 39019091 (-) True LOC110520456
XM_021600757.2 mRNA upstream 1056003 39081003 ~ 39084318 (-) True LOC110522389
LOC118966691 mRNA upstream 1075825 39100825 ~ 39115097 (-) True LOC118966691
TU45214 other downstream 307723 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 1513927 36508538 ~ 36510829 (-) True G38855
TU43851 other downstream 1615737 36370094 ~ 36409019 (-) True LOC110522187
TU43028 other downstream 2302700 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 2441148 35583292 ~ 35583608 (-) True G37976
TU45886 other upstream 100280 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 162488 38187488 ~ 38191736 (-) True G40768
TU47067 other upstream 996805 39021805 ~ 39022025 (-) True G41868
TU52237 other upstream 5013728 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 7695805 45720805 ~ 45721124 (-) True G49774

Expression Profile