RNA id: TCONS_00027346



Basic Information


Item Value
RNA id TCONS_00027346
length 1376
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id XLOC_013450
representative True

Chromosome Information


Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25697275 ~ 25745621 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTTTATTGCAGATATTTGGAATGCATTTGCTTGGCCCTTTTCTCTGTGGGTACATTCTGCTTTGCTTAAGTCGGTGTGCTACCGGCAGAGCTGCCCAAACTGTTCTTTAAACAGTTCAGTGCATTTTTCCCTTCGTCCCTTGGCAGTTCTGCGGAATGTTAGTTTGTGAGACTTGTAGTTAATTTGCAAGTCAGTCGACAGAGCTAGTTCCGTGCGGTCAGGACCACAGATGTGACTAAACTGCCCAATGCCACCACCAGAGCTCCGAGCAGAAACTTCCAAGAAATTCCCTGGAAGAGTAAGAAACAAGATCAAACGACGGAGGGGCTTGGACTCTGGCACATTTTAAAAGGACTCTTCCACCACTCTTATTCCTCTCACTAGGTGGTAATCAGTCACTTACAAACGGCTTCTTTTTGGGAGGAGGTGTCAGAAAGGGCGCAATGTTTTCGCCGAACACTCGAGCTGGTTTAGCTTGCCAGTTCTGGCTCTCATTTTCCCCCGCCTGTCTTTTGACCAGTTTGGAAAGTTCAGCATGAATAGCCTATAAAATACAACATGGACACATGTATGAGCACTTAAAATTATACTCAAAGCAACACAACAGAAGCAATTTTTTTAACCTGGTTTGAACTTTATTGTTTACGGAATAATGCGCTCCCGACGCAGTTTCCAACGCTGACCAAAAGAGAGCGCCATTTCACCGAATTAAAGCCTATTGACGTGCAACTTGGAAACTACTCTGGTTGGTTGTCAGTCGTCTTTCTAAAAGGAACACAACTTCATCTGAAAGACTACTTGAAAAAATGAACAGTCGAGAAGAGGACGTTCTGTGCAATGATGTTCAAAtgacaaaaacatgaaaaaaatcagACAGATGAGTATTATGCTACCTACTAAATTAAATGAATCATCTCTTCTTCAGACAAAGTCTGTCTCCCAGTAACACTACAACCTGTCCCTCATCTTTTGTCAACCATTTCTTTGTCTCTTTCTGTTCCTCTGGCTCAGTGTCTAGGGAAAAAGACTTCGGTATTTTCTAATTCTGACAAAAGAGGATTGAAAATCCTTGTGACAGTAAAGCACAGCTTGCTTCCAGCAGATCTGCCTTTAATGTATGATACTCTGACAAGGAAACGCATGTCATCGAAACAGATATTCATCAAAAATTAATTTCCTTTCTTTTAAAAAGCCAAACCACTTCTTGCTCGCTGCTATAACTTATGAAATCCAGTTAAAAGATAAGAAATCTATCTGCAAAATAACGATCAAAGAAATGTCAACCATATCATTATGAAAATAATTAATCTAGTGGGAATAGTACATTTTGCTCTTGAATCAACCTCTGTGAAAATATCCAACATTTTTATACCTGT

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00026553 lncRNA downstream 51612 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027345 lncRNA downstream 471839 25180539 ~ 25225436 (-) True XLOC_013445
TCONS_00027344 lncRNA downstream 471888 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026542 lncRNA downstream 471888 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00027343 lncRNA downstream 507665 25180539 ~ 25189610 (-) False XLOC_013445
TCONS_00026556 lncRNA upstream 14439 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00026564 lncRNA upstream 550544 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00027347 lncRNA upstream 550544 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00027348 lncRNA upstream 1309225 27054846 ~ 27066350 (-) True XLOC_013467
TCONS_00027349 lncRNA upstream 1612707 27358328 ~ 27362251 (-) True XLOC_013472
TCONS_00026551 mRNA downstream 50989 25563292 ~ 25646286 (-) False XLOC_013449
TCONS_00026550 mRNA downstream 50989 25563292 ~ 25646286 (-) False XLOC_013449
TCONS_00026552 mRNA downstream 51595 25572222 ~ 25645680 (-) False XLOC_013449
TCONS_00026549 mRNA downstream 128281 25563292 ~ 25568994 (-) False XLOC_013449
TCONS_00026547 mRNA downstream 294560 25391171 ~ 25402715 (-) True XLOC_013447
TCONS_00026555 mRNA upstream 9217 25754838 ~ 25771553 (-) False XLOC_013451
TCONS_00026557 mRNA upstream 37825 25783446 ~ 25855263 (-) False XLOC_013452
TCONS_00026558 mRNA upstream 37825 25783446 ~ 25905574 (-) False XLOC_013452
TCONS_00026559 mRNA upstream 37825 25783446 ~ 25905623 (-) False XLOC_013452
TCONS_00026561 mRNA upstream 351193 26096814 ~ 26101800 (-) True XLOC_013453
TCONS_00026548 other downstream 180644 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026541 other downstream 538498 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026536 other downstream 700628 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026529 other downstream 1136878 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 1220392 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026554 other upstream 9217 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 109389 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026563 other upstream 457682 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026577 other upstream 1134851 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026581 other upstream 1391244 27136865 ~ 27136982 (-) True XLOC_013468

Expression Profile


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